View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_17 (Length: 374)
Name: NF17647_low_17
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 9676386 - 9676041
Alignment:
| Q |
7 |
tgaggagcagcacagatagtaaaaagcattcagagttctacgatgccttgataagtaaggtttggagtcgacgtttagaactttcacacctgtgaccttg |
106 |
Q |
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| T |
9676386 |
tgaggtgcaacacaaatagtaaaaagcattcagagttctacaatgccttgataagtaaggtttggagttgaggtttagaactttcacaactgtgaccttg |
9676287 |
T |
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| Q |
107 |
ataagtaaggtttggagttggagttaaaaccatcgtaacagattcgtttgatagcgtgaggatttggaaacaaaatacaaatctgcatttgtgtcatttc |
206 |
Q |
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| T |
9676286 |
ataagtaaggtttggagttggagttaaaaccatcgtaacagatttgtttgatagcgtgaggatttggaaacaaaatacaaatctgcatttgtgtcatttc |
9676187 |
T |
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| Q |
207 |
aaagcagcattcataatctctgtatgtccagtgtttgaaaaatgtatttgccaagtgcaacaatataaattatacaatgaagtgtactatgttctttaaa |
306 |
Q |
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| T |
9676186 |
aaagcagcattcataatctctgtatgtccagtgtttgaaaaatgtatttgccaagtgcaacaatataaattatacaatgaagtgtactatgttctttaaa |
9676087 |
T |
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| Q |
307 |
aaagttaaattgatcaccttcttatgcaatgaagagtacaatctcgtttt |
356 |
Q |
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| T |
9676086 |
aaagttaaatt----accttcttatgcaatgaagagtactatctcgtttt |
9676041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 176 - 356
Target Start/End: Complemental strand, 10213821 - 10213638
Alignment:
| Q |
176 |
acaaaatacaaatctgcatttgt--gtcatttcaaagcagcattcataatctctgtatgtccagtgtttgaaa-aatgtatttgccaagtgcaacaatat |
272 |
Q |
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| T |
10213821 |
acaaaatgcaaatctgcatttacaagtcattttgaagcagcattcatactttgtgtatgctcaatgttagaaataaagtatttgccaagtgcaacaatat |
10213722 |
T |
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| Q |
273 |
aaattatacaatgaagtgtactatgttctttaaaaaagttaaattgatcaccttcttatgcaatgaagagtacaatctcgtttt |
356 |
Q |
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| T |
10213721 |
gaattatacgatgaagtgtactatgttctttaaaaaagttaaattgatcaccttcttatgcaatgaagagtactatctcgtttt |
10213638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 251 - 355
Target Start/End: Original strand, 10102410 - 10102515
Alignment:
| Q |
251 |
tatttgccaagtgcaacaatataaattatacaatgaagtgtactatgttcttt-aaaaaagttaaattgatcaccttcttatgcaatgaagagtacaatc |
349 |
Q |
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| T |
10102410 |
tatttgccaagtgcaacaatatgaattatacaatgaattgtactatgttctttaaaaaaagttaaactgatcaccttcttgtgcaatgaagagtactatc |
10102509 |
T |
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| Q |
350 |
tcgttt |
355 |
Q |
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|||||| |
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| T |
10102510 |
tcgttt |
10102515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 12105852 - 12105739
Alignment:
| Q |
238 |
tgtttgaaaaatgtatttgccaagtgcaacaatataaattatacaatgaagtgtactatgttctttaaaaaagttaaattgatcaccttcttatgcaatg |
337 |
Q |
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|||| |||||| || |||||||||| ||||||||| |||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||| |
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| T |
12105852 |
tgttagaaaaaagtgtttgccaagttcaacaatatgaattgtacaatgaagtgttctatgctctttgaaaaagttaaattgatcaccttcttgtgcaatg |
12105753 |
T |
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| Q |
338 |
aagagtacaatctc |
351 |
Q |
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| T |
12105752 |
aagagtactatctc |
12105739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 9677677 - 9677607
Alignment:
| Q |
258 |
caagtgcaacaatataaattatacaatgaagtgtactatgttctttaaaaaagttaaattgatcaccttctt |
329 |
Q |
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| T |
9677677 |
caagtgcaacaatatgaattgtacaatgaagtgttctatgct-tttaaaaaagttaaattgatcaccttctt |
9677607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 9684439 - 9684382
Alignment:
| Q |
298 |
ttctttaaaaaagttaaattgatcaccttcttatgcaatgaagagtacaatctcgttt |
355 |
Q |
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| T |
9684439 |
ttctttgaaaaagttaaatcgatcaccttctcatgcaatgaagagtactatcttgttt |
9684382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 12108142 - 12108062
Alignment:
| Q |
140 |
cgtaacagattcgtttgatagcgtgaggatttggaaacaaaa-tacaaatctgcatt--tgtgtcatttcaaagcagcatt |
217 |
Q |
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| T |
12108142 |
cgtaacagattggtttaatggtgtgaggatttaggaacaaaaatacaaatctgcattcatgagtcatttcaaagcagcatt |
12108062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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