View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_19 (Length: 350)
Name: NF17647_low_19
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 41481751 - 41482013
Alignment:
| Q |
17 |
tattccactctgtgattctaataatat-aaaaagagataattaatttgaatgtattaatttccacgtgtcctattttgattgaagaattgcacaaacagt |
115 |
Q |
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| T |
41481751 |
tattccactctgtgattctaataatattaaaaagagataattaatttgaatgtattaatttccacgtgtcctattttgattgaagaattgcacaaacagt |
41481850 |
T |
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| Q |
116 |
agcataacaagagcatagaatagtatttgaaagaaacagtgcttggtcatcacgtttcttgctgatgctgcgcgcgcacacaaacgcaggcagagcaaat |
215 |
Q |
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| T |
41481851 |
accataacaagagcatagaatagtatttgaaagaaacagtgcttggtcatcacgtttcttgctgatgctgcgcgcgcgcaaaaacgcaggcagagcaaat |
41481950 |
T |
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| Q |
216 |
acaccaccaccttgtgctcatgattcgtactacactgcacaaaatgacaaaaacacaatttcaacaaa |
283 |
Q |
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| T |
41481951 |
acaccaccaccttgtgctcatgattcgtactacact-----aaatgacaaaaacacaatttcaacaaa |
41482013 |
T |
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Back To:
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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 44506951 - 44507007
Alignment:
| Q |
42 |
ataaaaagagataattaatttgaatgtattaatttccacgtgtcctattttgattga |
98 |
Q |
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| T |
44506951 |
ataaaaagagataattaatttgaatgtattaatttccacatgtcctatattgattga |
44507007 |
T |
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