View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17647_low_21 (Length: 342)
Name: NF17647_low_21
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_21 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 42658116 - 42658456
Alignment:
| Q |
1 |
tcaaaagcacacaacaccataagaaatacataatgtaacaacattggtgcactaaagaaagagnnnnnnnnnntatccaagatgccccctgatatacttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42658116 |
tcaaaagcacacaacaccataagaaatacataatgtaacaacattggtgcactaaagaaagagaaaaaaaaa-tatccaagatgccccctgatatacttc |
42658214 |
T |
|
| Q |
101 |
atattcgtcctcttgttcaattttcacctccacacacaactcaagtaaaagaaaatcaaccttctatattttacaaatatcaaaaagtaacaaaaaggat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42658215 |
atattcgtcctcttgttcaattttcacctccacacacaactcaagtaaaagaaaatcaaccttctatatttcacaaatatcaaaaagtaacaaaaaggat |
42658314 |
T |
|
| Q |
201 |
gaatctcacaaaaaagaaactcatccctatccttgttttgttcctctcaaccatatcaatctttagaattcttagtctcaatattaaaactacttctaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42658315 |
gaatctcacaaaaaagaaactcatccctatccttgttttgttcctctcaaccatatcaatctttagaattcttagtctcaatattaaaactacttctaca |
42658414 |
T |
|
| Q |
301 |
cctttttccacctacaacaaaattattgcatcagatacacat |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42658415 |
cctttttccacctacaacaaaattattgcatcacatacacat |
42658456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University