View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_25 (Length: 317)
Name: NF17647_low_25
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_25 |
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| [»] scaffold0596 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 19666167 - 19666455
Alignment:
| Q |
16 |
tttgtcacgaatataatgccactctatctctgtatgtcgagttctttcatgaaataccggattagatgcaatgtgaagagttgctttgttatcataatac |
115 |
Q |
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| T |
19666167 |
tttgtcacgaataaaatgacaatctatctcggtatgtcgagttctttcatgaaatatcggattagatgcaatatgaagagttggtttgttatcgcaatac |
19666266 |
T |
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| Q |
116 |
aaccgtgcttcctttgggtgcaatatctccaaatccttcaacaatggacgtagccaagacaactcacaacatgcgcctgtcataactctatattctgctt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |
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| T |
19666267 |
aaccgtgcttcctttgggtgcaatatctccaaatccttcaacaatggacgtagccaagacaactcacaacatgcgtctgtcatagctctatattctattt |
19666366 |
T |
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| Q |
216 |
tagctgatgatagagaaattgtcttttgnnnnnnngttcaccaagacatcaaagaggggcccnnnnnnncacaataccctatagttgat |
304 |
Q |
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| T |
19666367 |
tagctgatgatagagaaattgtcttttgtctttttgttcaccaagacatcaaagaggggcccaaaaaaacacaataccctataattgat |
19666455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 9860 - 9647
Alignment:
| Q |
20 |
tcacgaatataatgccactctatctctgtatgtcgagttctttcatgaaataccggattagatgcaatgtgaagagttgctttgttatcataatacaacc |
119 |
Q |
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| T |
9860 |
tcacgaataaaatgacaatcaatctctatatgtcgagttctttcatgaaataccggattggacgcaatgtgaagagctgctttgttgtcacaatacaaca |
9761 |
T |
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| Q |
120 |
gtgcttcctttgggtgcaatatctccaaatccttcaacaatggacgtagccaagacaactcacaacatgcgcctgtcataactctatattctgctttagc |
219 |
Q |
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| T |
9760 |
gttcttcctttgagtgcaatatctccaaatccttcaacaatgaacgtagccaagacaactcacaacatgcgcctgtcatagctctatattctgcttcagc |
9661 |
T |
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| Q |
220 |
tgatgatagagaaa |
233 |
Q |
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|||||| ||||||| |
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| T |
9660 |
tgatgacagagaaa |
9647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 47752839 - 47752626
Alignment:
| Q |
20 |
tcacgaatataatgccactctatctctgtatgtcgagttctttcatgaaataccggattagatgcaatgtgaagagttgctttgttatcataatacaacc |
119 |
Q |
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||||||||| |||| || || |||||| ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||| |||||||| |
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| T |
47752839 |
tcacgaataaaatgacaatcaatctctatatgtcgagttctttcatgaaataccggattggacgcaatgtgaagagctgctttgttgtcacaatacaaca |
47752740 |
T |
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| Q |
120 |
gtgcttcctttgggtgcaatatctccaaatccttcaacaatggacgtagccaagacaactcacaacatgcgcctgtcataactctatattctgctttagc |
219 |
Q |
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| T |
47752739 |
gttcttcctttgagtgcaatatctccaaatccttcaacaatgaacgtagccaagacaactcacaacatgcgcctgtcatagctctatattctgcttcagc |
47752640 |
T |
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| Q |
220 |
tgatgatagagaaa |
233 |
Q |
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|||||| ||||||| |
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| T |
47752639 |
tgatgacagagaaa |
47752626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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