View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_26 (Length: 308)
Name: NF17647_low_26
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 40 - 298
Target Start/End: Complemental strand, 44437304 - 44437042
Alignment:
| Q |
40 |
ctactaataagtagaagtgtttgcttaaatacaaattatagtgtattaaacaaattagtagttttcgtcnnnnnnnnnnn----tgtagctgtaaaattc |
135 |
Q |
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| T |
44437304 |
ctactaataagtagaagtgtttgcttaaatacaaattatagtgtattaaacaaattagtagttttcgtcaacaaaaaaaaaaaatgtagctgtaaaattc |
44437205 |
T |
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| Q |
136 |
tcactcgtataaaatgtaacagtctgagtaaggtgtgacataaaggcactaataggttggttgctttttacagagaatattaaatgcttttaatagcaaa |
235 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44437204 |
tcactcgtaaaaaatgtaacagtctgagtaaagtgtgacataaaggcactaataggttggttgctttttacagagaatattaaatgcttttaatagcaaa |
44437105 |
T |
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| Q |
236 |
aactttacaaaatgttgaacttattgttaagttgttatacttttcaattttacttattttcat |
298 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44437104 |
aactttacaaaatgttgaacttattgctaagttgttatacttttcaattttacttattttcat |
44437042 |
T |
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