View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_28 (Length: 300)
Name: NF17647_low_28
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 42068338 - 42068482
Alignment:
| Q |
50 |
ctatcacccctcaagtgggttgtatttttgtttgctcatgaagggag---ctcgggttccacgttgaatcaagggcaaccatataaatgatttaaacata |
146 |
Q |
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| T |
42068338 |
ctatcacccctcaagtgggttgtatttttgtttgatcatgaagggaggagctcgggttccacgttgaatcaagggcaatcatataaatgagttaaacata |
42068437 |
T |
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| Q |
147 |
atattttaacgtaaaatcttaatacattttgtatatgggtcatct |
191 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
42068438 |
atattttaacgtaaaatcttaagatattttgtatatgggtcatct |
42068482 |
T |
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