View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_29 (Length: 300)
Name: NF17647_low_29
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 49866172 - 49865902
Alignment:
| Q |
12 |
atgaaggaattgatcaaagcagtattcaaagcaacagctgaagaactctcgaaacaaatccatagctcaaaactctacaaggaattagctaccaatgaca |
111 |
Q |
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| T |
49866172 |
atgaaggaattgatcaaagcagtattcaaagcaacagctgaagaactctcgaaacaaatccataactcaaaactctacaaggaattagctaccaatgaca |
49866073 |
T |
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| Q |
112 |
tgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatattcatcaatctattcacacattggataaatttgatattagaaa |
211 |
Q |
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| T |
49866072 |
tgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattggataaatttgatattagaaa |
49865973 |
T |
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| Q |
212 |
aattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttat |
282 |
Q |
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| T |
49865972 |
aattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttat |
49865902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 49872103 - 49871834
Alignment:
| Q |
12 |
atgaaggaattgatcaaagcagtattcaaagcaacagctgaagaactctcgaaacaaatccatagctcaaaactctacaaggaattagctaccaatgaca |
111 |
Q |
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|||||||||||||||||| || |||||| |||||||||||||||||| ||||||||| || | ||||| ||||||||||||||| ||||||||||||| |
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| T |
49872103 |
atgaaggaattgatcaaacaagcattcaatgcaacagctgaagaactcgtgaaacaaatacacaactcaacactctacaaggaattggctaccaatgaca |
49872004 |
T |
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| Q |
112 |
tgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatattcatcaatctattcacacattggataaatttgatattagaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| || |
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| T |
49872003 |
tgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattggataaatttgatcttaacaa |
49871904 |
T |
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| Q |
212 |
aattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgttta |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871903 |
aattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgttta |
49871834 |
T |
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