View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_31 (Length: 293)
Name: NF17647_low_31
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_31 |
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| [»] scaffold0215 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 147 - 274
Target Start/End: Complemental strand, 45455524 - 45455397
Alignment:
| Q |
147 |
caattattgatgttggtaaactcttctgacttggcctattttatacctaactctaatgattatcataaattactatggtgaacatggactaatgatttag |
246 |
Q |
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| T |
45455524 |
caattattgatgctggtaaactcttctgacttggcctcttttatacgtaactctaatgattatcataaattactgtggtgaacatggactaatgatttag |
45455425 |
T |
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| Q |
247 |
aatgcattaagtttatgtatgtttattc |
274 |
Q |
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| T |
45455424 |
aatgcattaagtttatgtatgcttattc |
45455397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 5576184 - 5576147
Alignment:
| Q |
136 |
tgttcttgaatcaattattgatgttggtaaactcttct |
173 |
Q |
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| T |
5576184 |
tgttcttgaatcaaatattgatgtgggtaaactcttct |
5576147 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 257
Target Start/End: Complemental strand, 47963150 - 47963026
Alignment:
| Q |
136 |
tgttcttgaatcaattattgatgttggtaaactcttctgacttggcct-attttatacctaa-ct-ctaatgattatcataaattactatggtgaacatg |
232 |
Q |
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| T |
47963150 |
tgttcttgaatcaaatattgatgcgggtaaactcttcttacttagtctcattttatatttaatctactaacgattataaaaaattactctggcaaacatg |
47963051 |
T |
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| Q |
233 |
gactaatgatttagaatgcattaag |
257 |
Q |
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| T |
47963050 |
gactaatgatttagattgcattaag |
47963026 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 24510064 - 24510135
Alignment:
| Q |
136 |
tgttcttgaatcaattattgatgttggtaaactcttctgacttggc-ctattttatacctaactctaatgat |
206 |
Q |
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| T |
24510064 |
tgttcttgaatcaattattgatgtaggtaaactcttcttacttagctttatttgatatttaactctaatgat |
24510135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0215 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0215
Description:
Target: scaffold0215; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 19940 - 20014
Alignment:
| Q |
136 |
tgttcttgaatcaattattgatgttggtaaactcttctgacttggcct-attttatacctaactctaatgattat |
209 |
Q |
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| T |
19940 |
tgttcttgaatcaattattgatgcatgtaaactcttcttacttagcttcattttatatttaactctaatgattat |
20014 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 11648262 - 11648214
Alignment:
| Q |
6 |
acttcttatgtagaccaacctttaaaaaagaaagaaaataaacaaaggt |
54 |
Q |
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| T |
11648262 |
acttcttatgcagaccagccattaaaaaagatagaaaataaacaaaggt |
11648214 |
T |
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