View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_34 (Length: 285)
Name: NF17647_low_34
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 28261716 - 28261437
Alignment:
| Q |
1 |
tgaaatctaatatagatatgaataatgtaaaatgcatcaacaaatgttctaattatagtaagtgaaacttcaagaccaattgacatatcaatacactttt |
100 |
Q |
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| T |
28261716 |
tgaaacctaatatagatatgaataatgtaaaatgcatcaacaaatgttctaattatagtaagtgaaacttcaagaccaattgacatatcaatacactttt |
28261617 |
T |
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| Q |
101 |
ctttcttagcaactggtaagtaaaagaaaagtggatccacaaacaatgaaatcaaacaagctgctaagaatattttgttccataaatttattcttggtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28261616 |
ctttcttagcaactggtaagtaaaagaaaagtggatccacaaacaatgaaatcaaacaagctgctaagaatattttgttccataaatttattcttggtcc |
28261517 |
T |
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| Q |
201 |
tctaggatcgaatactaaaatctctcctgcatcataatcttcagaaaaaactcttgaaagtcctcttccatttgatgatg |
280 |
Q |
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| T |
28261516 |
tctaggatcgaatactaaaatctctcctgcatcataatcttcagaaaaaactcttgaaagtcctcttccatttgatgatg |
28261437 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 40513560 - 40513630
Alignment:
| Q |
112 |
actggtaagtaaaagaaaagtggatccacaaacaatgaaatcaaacaagctgctaagaatattttgttcca |
182 |
Q |
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||||| || |||||||| ||||||||||||||||| |||| ||||| ||| |||| ||||| |||||||| |
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| T |
40513560 |
actggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttcca |
40513630 |
T |
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