View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_36 (Length: 266)
Name: NF17647_low_36
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 47609707 - 47609919
Alignment:
| Q |
18 |
tgtactgtctttacgagactcaaccattcaaacctcctttgaaggtctatatatcccttggtatggcaattttttagttgaatcataagtgccatacaat |
117 |
Q |
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| T |
47609707 |
tgtactgtctttacgagactcaaccattcaaacctccttttaaggtctatatatcccttggtatgacaattttgcagttgaatcataagtgccatacagt |
47609806 |
T |
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| Q |
118 |
tattcttgttggaaggaatgaattatttgatttgctcataacataagctttaattatggttttgtattgactcaattgagctgtataaggctacacatgt |
217 |
Q |
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| T |
47609807 |
tattcttgttcgaaggaatgaattatttgatttgctcgtaacataagctttaattatggttttgtattgactcaattgagctgtataaagctacacatgt |
47609906 |
T |
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| Q |
218 |
atgtttctatttt |
230 |
Q |
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| T |
47609907 |
atgtttctatttt |
47609919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 49543938 - 49544088
Alignment:
| Q |
16 |
catgtactgtctttacgagactcaaccattcaaacctcctttgaaggtctatatatcccttggtatggcaattttttagttgaatcataagtgccataca |
115 |
Q |
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| T |
49543938 |
catgtactgtctttacgagactcaaccattcaaacctccttttaaggtctatatatcccttggtatggcaattttttagttgaatcataagtgtcataca |
49544037 |
T |
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| Q |
116 |
attattcttgttggaaggaatgaattatttgatttgctcataacataagct |
166 |
Q |
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| T |
49544038 |
attattcttgttggaaggaatgaattatttgatttgctcataacataagct |
49544088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 49544085 - 49544119
Alignment:
| Q |
196 |
agctgtataaggctacacatgtatgtttctatttt |
230 |
Q |
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| T |
49544085 |
agctgtataaggctacacatgtatgtttctatttt |
49544119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 255
Target Start/End: Original strand, 3930174 - 3930203
Alignment:
| Q |
226 |
attttggcttaattgcactttttcccctat |
255 |
Q |
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| T |
3930174 |
attttggcttaattgcactttttcccctat |
3930203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 52892231 - 52892110
Alignment:
| Q |
110 |
catacaattattcttgttggaaggaatgaattatttgatttgctcataacataagctttaattatgg-ttttgtattgactcaattgagctgtataaggc |
208 |
Q |
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| T |
52892231 |
catacaattatgcttgttggaaggaatggattagttaattttctcataacataagctttaattatggtttttttattgactcaattgagctgtataaagc |
52892132 |
T |
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| Q |
209 |
tacacatgtatgtttctatttt |
230 |
Q |
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||||| |||||||||||||||| |
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| T |
52892131 |
tacacgtgtatgtttctatttt |
52892110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 52892359 - 52892286
Alignment:
| Q |
20 |
tactgtctttacgagactcaaccattcaaacctcctttgaaggtctatatatcccttggtatggcaatttttta |
93 |
Q |
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| T |
52892359 |
tactgtctttacgagactcaaccattcaaacctccttttaaggtctatatatcccttggtatgggaatttttta |
52892286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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