View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_40 (Length: 246)
Name: NF17647_low_40
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 36451059 - 36451265
Alignment:
| Q |
18 |
gcttcttagtttgattgtcttttttaagctttgactcaacaaaatctaagcatcacacttttagcatggagttaccagtgattatggtagattaaaagaa |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36451059 |
gcttcttagtttgattgccttttttaagctttgactcaacaaaatctaagcatcacacttttagcatggagttaccagtgattatggtagattaaaagaa |
36451158 |
T |
|
| Q |
118 |
tgaatttcaccatttttattaaacaaaaa-cttaaaaagaagtagagtatctttggataaatagcctaattaagcacttataatatctcagttttccagc |
216 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36451159 |
tgaatttcaccatttttattaaacaaaaagcttaaaaagaactagagtttctttggataaatagcctaattaagcacttataatatctgagttttccagc |
36451258 |
T |
|
| Q |
217 |
agcaaca |
223 |
Q |
| |
|
||||||| |
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|
| T |
36451259 |
agcaaca |
36451265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 25970516 - 25970311
Alignment:
| Q |
18 |
gcttcttagtttgattgtcttttttaagctttgactcaacaaaatctaagcatcacacttttagcatggagttaccagtgattatggtagattaaaagaa |
117 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25970516 |
gcttcttagtttgattgccttttttaagttttgactcaacaaaatctaagcatcacacttttagcatggagttaccactgattatggtagattaaaagaa |
25970417 |
T |
|
| Q |
118 |
tgaatttcaccatttttattaaacaaaaacttaaaaagaagtagagtatctttggataaatagcctaattaagcacttataatatctcagttttccagca |
217 |
Q |
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||||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25970416 |
tgaatttcatcatttttattaaacaaaagtttaaaaagagctagagtttctttggataaatagcctaattaagcacttataatatctgagttttccagca |
25970317 |
T |
|
| Q |
218 |
gcaaca |
223 |
Q |
| |
|
|||||| |
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|
| T |
25970316 |
gcaaca |
25970311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 47334613 - 47334408
Alignment:
| Q |
18 |
gcttcttagtttgattgtcttttttaagctttgactcaacaaaatctaagcatcacacttttagcatggagttaccagtgattatggtagattaaaagaa |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47334613 |
gcttcttagtttgattgccttttttaagctttgactcgacaaaatctaagcatcacacttttagcatggagttaccactgattatggtagattaaaagaa |
47334514 |
T |
|
| Q |
118 |
tgaatttcaccatttttattaaacaaaaacttaaaaagaagtagagtatctttggataaatagcctaattaagcacttataatatctcagttttccagca |
217 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
47334513 |
tgaatttcatcatttttattaaacaaaagcttaaaaagagctagagtgtctttggataaatagcctaattaagcacttataatatctgagttttccagca |
47334414 |
T |
|
| Q |
218 |
gcaaca |
223 |
Q |
| |
|
|||||| |
|
|
| T |
47334413 |
gcaaca |
47334408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 52468014 - 52468050
Alignment:
| Q |
168 |
tttggataaatagcctaattaagcacttataatatct |
204 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| |
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|
| T |
52468014 |
tttggataaatagcttaattaagcacttatagtatct |
52468050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 11493833 - 11493900
Alignment:
| Q |
130 |
tttttattaaacaaaaacttaaaaagaagtagagtatctttggataaatagcctaattaagcacttata |
198 |
Q |
| |
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|||||||||||||||| ||||||| || |||||| | ||||||||| ||| |||||||||||||||| |
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| T |
11493833 |
tttttattaaacaaaagattaaaaa-aactagagtgtggttggataaacagcttaattaagcacttata |
11493900 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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