View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17647_low_41 (Length: 246)
Name: NF17647_low_41
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_41 |
 | |
|
| [»] scaffold0596 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 19666196 - 19665967
Alignment:
| Q |
2 |
gagatagattgtcattatattcgtgacaaaattcaagatggttcagttgcaactgagtatgttccatcaacagaacaagttgttgatgtgttcactaaac |
101 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| | || ||||||||||||||||||||||||||| |
|
|
| T |
19666196 |
gagatagattgtcattttattcgtgacaaaattcaagatggtttatttgcaactgagtatgttccataagcataacaagttgttgatgtgttcactaaac |
19666097 |
T |
|
| Q |
102 |
catttgggaaggaatcctttcttagaatgaagcgcaagttgggagttcttaatatccactctctaacttgagggggagtgttaggaaagtcaattatatt |
201 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19666096 |
catttgggaaggaatcctttcttacaatgaagcgcaagttgggagttcttaatatccactctctaacttgacggggagtgttaggaaagtcaattatatt |
19665997 |
T |
|
| Q |
202 |
ctatgattcttgttgttatgagagttaatt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19665996 |
ctatgattcttgttgttatgagagttaatt |
19665967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 9834 - 10065
Alignment:
| Q |
1 |
agagatagattgtcattatattcgtgacaaaattcaagatggttcagttgcaactgagtatgttccatcaacagaacaagttgttgatgtgttcactaaa |
100 |
Q |
| |
|
|||||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
9834 |
agagattgattgtcattttattcgtgataaaattcaagatggttcaattgcaactgagtatgttccttcagcagaacaagttgccaatgtgttcactaaa |
9933 |
T |
|
| Q |
101 |
ccatttgggaaggaatcctttcttagaatgaagcgcaagttgggagttcttaatatccactctctaacttgagggggagtgttaggaaagtcaattatat |
200 |
Q |
| |
|
||| | ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9934 |
ccactagggaaggaatcctttcttacaatgaagtgcaagttaggagttcttaatatccactctccaacttgagggggagtgttaggaaagtcaactatat |
10033 |
T |
|
| Q |
201 |
tctatgattcttgttgttatgagagttaattg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10034 |
tctatgattcttgttgttatgagagttaattg |
10065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 5496 - 5548
Alignment:
| Q |
180 |
tgttaggaaagtcaattatattctatgattcttgttgttatgagagttaattg |
232 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5496 |
tgttaggaaagtcaactatattctatgattcttgttgttatgagagttaattg |
5548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 47752813 - 47753044
Alignment:
| Q |
1 |
agagatagattgtcattatattcgtgacaaaattcaagatggttcagttgcaactgagtatgttccatcaacagaacaagttgttgatgtgttcactaaa |
100 |
Q |
| |
|
|||||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
47752813 |
agagattgattgtcattttattcgtgataaaattcaagatggttcaattgcaactgagtatgttccttcagcagaacaagttgccaatgtgttcactaaa |
47752912 |
T |
|
| Q |
101 |
ccatttgggaaggaatcctttcttagaatgaagcgcaagttgggagttcttaatatccactctctaacttgagggggagtgttaggaaagtcaattatat |
200 |
Q |
| |
|
||| | ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47752913 |
ccactagggaaggaatcctttcttacaatgaagtgcaagttcggagttcttaatatccactctccaacttgagggggagtgttaggaaagtcaactatat |
47753012 |
T |
|
| Q |
201 |
tctatgattcttgttgttatgagagttaattg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
47753013 |
tctatgattcttgttgttatgagagttaattg |
47753044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 39037341 - 39037288
Alignment:
| Q |
179 |
gtgttaggaaagtcaattatattctatgattcttgttgttatgagagttaattg |
232 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39037341 |
gtgttaggaaagtcaactatattctatgattcttgttgttatgagagttaattg |
39037288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University