View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_46 (Length: 230)
Name: NF17647_low_46
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40742598 - 40742376
Alignment:
| Q |
1 |
atggtgtcggcgtttcagtgtccgtgtcgtattcagtgtccatgtcgtattcgtgcttcatagaattgaatgtatattacttacggttacaaaaatgcct |
100 |
Q |
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| T |
40742598 |
atggtgtcggcgtttcaatgtccgtgtcgtatccagtgtccatgtcgtattcgtgcttcatagaattgaatgtatattacttacggttacaaaaatgcct |
40742499 |
T |
|
| Q |
101 |
tgaaagatagcacatgttttgtatcttccccaataagaatcactaaggaaagcaccaacaagagagaagatgtaaactgtgccagtccacttgctgacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40742498 |
tgaaagatagcacatgttttgtatcttccccaataagaatcactaaggaaagcaccaacaagagagaagatgtaaactgtgccagtccacttgctgacat |
40742399 |
T |
|
| Q |
201 |
tgttagcagcagcagtattatct |
223 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
40742398 |
tgttagcagcagcagcattatct |
40742376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 77 - 204
Target Start/End: Original strand, 4709831 - 4709958
Alignment:
| Q |
77 |
ttacttacggttacaaaaatgccttgaaagatagcacatgttttgtatcttccccaataagaatcactaaggaaagcaccaacaagagagaagatgtaaa |
176 |
Q |
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|||||||| ||||||||||| | ||||||| |||||||||||| ||||||||||||||||| ||||| |||||||| || || |||||||||||||||| |
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| T |
4709831 |
ttacttacaattacaaaaatgacctgaaagacagcacatgttttatatcttccccaataagagtcacttaggaaagctcccactagagagaagatgtaaa |
4709930 |
T |
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| Q |
177 |
ctgtgccagtccacttgctgacattgtt |
204 |
Q |
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| T |
4709931 |
cagttccagtccatttgctcacgttgtt |
4709958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 2743578 - 2743487
Alignment:
| Q |
120 |
tgtatcttccccaataagaatcactaaggaaagcaccaacaagagagaagatgtaaactgtgccagtccacttgctgacattgttagcagca |
211 |
Q |
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||||||||||||| ||||| ||||| |||||||| |||| |||||| |||||||||||||| || ||||||||||| |||||||| |||||| |
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| T |
2743578 |
tgtatcttccccagtaagagtcactgaggaaagctccaagaagagaaaagatgtaaactgtccctgtccacttgctcacattgtttgcagca |
2743487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 3804574 - 3804663
Alignment:
| Q |
121 |
gtatcttccccaataagaatcactaaggaaagcaccaacaagagagaagatgtaaactgtgccagtccacttgctgacattgttagcagc |
210 |
Q |
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| T |
3804574 |
gtatcttccccaataagaatcactaaggaatgctcccaagagtgaaaaaatgtaaacagttccagtccacttgctgacattgttagcagc |
3804663 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 396156 - 396047
Alignment:
| Q |
101 |
tgaaagatagcacatgttttgtatcttccccaataagaatcactaaggaaagcaccaacaagagagaagatgtaaactgtgccagtccacttgctgacat |
200 |
Q |
| |
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||||||||||| |||||| |||||||||||||||||||||||||||||| || || | || || || |||||||| || ||||||||| |||||||| |
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| T |
396156 |
tgaaagatagcgcatgttaagtatcttccccaataagaatcactaaggaatgctcccaagagtgaaaatatgtaaacagttccagtccacaagctgacat |
396057 |
T |
|
| Q |
201 |
tgttagcagc |
210 |
Q |
| |
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| |||||||| |
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| T |
396056 |
tattagcagc |
396047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 26329438 - 26329497
Alignment:
| Q |
5 |
tgtcggcgtttcagtgtccgtgtcgtattcagtgtccatgtc-gtattcgtgcttcatag |
63 |
Q |
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||||||||| |||||||| ||||||| | |||||||| |||| ||||||||||||||||| |
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| T |
26329438 |
tgtcggcgtgtcagtgtctgtgtcgtgtccagtgtccgtgtctgtattcgtgcttcatag |
26329497 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 29510359 - 29510419
Alignment:
| Q |
4 |
gtgtcggcgtttcagtgtccgtgtcgtattcagtgtccatgtc-gtattcgtgcttcatag |
63 |
Q |
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|||||||||| |||||||||||||||| | | ||||||||||| |||| |||||||||||| |
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| T |
29510359 |
gtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccatgtcagtatccgtgcttcatag |
29510419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 10335341 - 10335403
Alignment:
| Q |
4 |
gtgtcggcgtttcagtgtccgtgtcgtattcagtgtccatg-tcgtattcgtgcttcatagaa |
65 |
Q |
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|||||||||| |||||||||||||||| | | |||||| || |||||| |||||||||||||| |
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| T |
10335341 |
gtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgtatccgtgcttcatagaa |
10335403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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