View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_8 (Length: 471)
Name: NF17647_low_8
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 14392594 - 14392767
Alignment:
| Q |
15 |
agttgacacttgtatcatatttatcatgaatatcaataattataatactatactttgtcgaagatttttcaattgaaaaatgatagtatctcagtcagtt |
114 |
Q |
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| T |
14392594 |
agttgacacttgtatcatatttatcatgaataataataattataatactatgctttgtcgaagatttttcaattgaaaaatgatagtatctcagtcagtt |
14392693 |
T |
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| Q |
115 |
ggatgtgacagtaaagatgaacacataaagagaaaatatgaataatgtgtgaatgataatgaataaataaatac |
188 |
Q |
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| T |
14392694 |
ggatgtgacagtaaagatgaacacataaagagaaaatatgaataatgtgtgaatgataataaataaataaatac |
14392767 |
T |
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Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 362 - 452
Target Start/End: Original strand, 14393299 - 14393389
Alignment:
| Q |
362 |
tactcttccttcgcatttatttgaagttattgaattcaagtcatgctattcatgattttatagataacgtgctaggttggattagtattaa |
452 |
Q |
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| T |
14393299 |
tactcttccttaacatttatttgaagttattgaagtcaagtcatgctattcataattctgtagataacgtgctaggttggattagtattaa |
14393389 |
T |
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