View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17647_low_9 (Length: 455)

Name: NF17647_low_9
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17647_low_9
NF17647_low_9
[»] chr4 (9 HSPs)
chr4 (126-440)||(45472032-45472356)
chr4 (1-33)||(51187658-51187690)
chr4 (1-33)||(8847979-8848011)
chr4 (1-33)||(11180949-11180981)
chr4 (1-33)||(22557005-22557037)
chr4 (1-33)||(23628876-23628908)
chr4 (1-33)||(40952061-40952093)
chr4 (1-33)||(41144305-41144337)
chr4 (1-33)||(46045795-46045827)
[»] chr5 (10 HSPs)
chr5 (1-32)||(10042832-10042863)
chr5 (1-33)||(790061-790093)
chr5 (1-33)||(2530125-2530157)
chr5 (1-33)||(7536685-7536717)
chr5 (1-33)||(19361690-19361722)
chr5 (1-33)||(28746318-28746350)
chr5 (1-33)||(29382576-29382608)
chr5 (1-33)||(30503759-30503791)
chr5 (1-33)||(30544102-30544134)
chr5 (1-33)||(37147107-37147139)
[»] scaffold0244 (1 HSPs)
scaffold0244 (1-33)||(7574-7606)
[»] scaffold0198 (1 HSPs)
scaffold0198 (1-33)||(15261-15293)
[»] chr8 (7 HSPs)
chr8 (1-33)||(11579234-11579266)
chr8 (1-33)||(36059276-36059308)
chr8 (1-33)||(37034866-37034898)
chr8 (1-33)||(38139353-38139385)
chr8 (1-33)||(41526351-41526383)
chr8 (1-33)||(42844320-42844352)
chr8 (1-33)||(42984032-42984064)
[»] chr7 (5 HSPs)
chr7 (1-33)||(4400065-4400097)
chr7 (1-33)||(21134356-21134388)
chr7 (1-33)||(36765616-36765648)
chr7 (1-33)||(36769266-36769298)
chr7 (1-33)||(44651882-44651914)
[»] chr6 (7 HSPs)
chr6 (1-33)||(5414562-5414594)
chr6 (1-33)||(7541147-7541179)
chr6 (1-33)||(17505528-17505560)
chr6 (1-33)||(28472263-28472295)
chr6 (1-33)||(29043249-29043281)
chr6 (1-33)||(34207003-34207035)
chr6 (1-33)||(34247755-34247787)
[»] chr3 (6 HSPs)
chr3 (1-33)||(12101464-12101496)
chr3 (1-33)||(35690212-35690244)
chr3 (1-33)||(38361793-38361825)
chr3 (1-33)||(39721302-39721334)
chr3 (1-33)||(41990764-41990796)
chr3 (1-33)||(43316516-43316548)
[»] chr2 (8 HSPs)
chr2 (1-33)||(1118023-1118055)
chr2 (1-33)||(2180061-2180093)
chr2 (1-33)||(3243295-3243327)
chr2 (1-33)||(10120652-10120684)
chr2 (1-33)||(35423829-35423861)
chr2 (1-33)||(38879179-38879211)
chr2 (1-33)||(40202258-40202290)
chr2 (1-33)||(41452858-41452890)
[»] chr1 (3 HSPs)
chr1 (1-33)||(24473551-24473583)
chr1 (1-33)||(39879140-39879172)
chr1 (1-33)||(43119114-43119146)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 126 - 440
Target Start/End: Complemental strand, 45472356 - 45472032
Alignment:
Q  126 gtctgaccaaacggtatctaaatatttgttatttgtggcactggcacatgttagcatatattttcgtatataccttaaaaaagaaagaaccatacatagt 225  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45472356 gtctggccaaacggtatctaaatatttgttatttgtggcactggcacatgttagcatatattttcgtatataccttaaaaaagaaagaaccatacatagt 45472257  T
Q  226 gattcgtactccttaatttgtt-----------gtggcaccactgcacgtcgcgtagtactcatccgagaatgaaagaattcgaattctatgaggccacg 314  Q
    ||||||||||||||||||||||           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45472256 gattcgtactccttaatttgttctttatttgttgtggcaccactgcacgtcacgtagtactcatccgagaatgaaagaattcgaattctatgaggccacg 45472157  T
Q  315 gctacatgcgagtattgcaaacccaactggattttatcaggttgttgtactccacaattcatacctaccatttttctatgagctcacaattcataccatc 414  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45472156 gctacatgcgagtattgcaaaccccgctggattttatcaggttgttgtact-cacaattcatacctaccatttttctatgagctcacaattcataccatc 45472058  T
Q  415 atcacctaccagttcaccccaacaac 440  Q
    ||||||||||||||||||||||||||    
T  45472057 atcacctaccagttcaccccaacaac 45472032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 51187658 - 51187690
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||||||||||    
T  51187658 aacaacttttaacttaaaaataacttcagaact 51187690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8847979 - 8848011
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  8847979 aacaacttttaacttaaaaataactttagaact 8848011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11180949 - 11180981
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  11180949 aacaacttttaacttaaaaataactttagaact 11180981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22557005 - 22557037
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  22557005 aacaacttttaacttaaaaataactttagaact 22557037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 23628876 - 23628908
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  23628876 aacaacttttaacttaaaaataactttagaact 23628908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 40952061 - 40952093
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  40952061 aacaacttttaacttaaaaataactttagaact 40952093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41144337 - 41144305
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  41144337 aacaacttttaacttaaaaataactttagaact 41144305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 46045827 - 46045795
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  46045827 aacaacttttaacttaaaaataactttagaact 46045795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 10042832 - 10042863
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaac 32  Q
    ||||||||||||||||||||||||||||||||    
T  10042832 aacaacttttaacttaaaaataacttcagaac 10042863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 790093 - 790061
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  790093 aacaacttttaacttaaaaataactttagaact 790061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2530125 - 2530157
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  2530125 aacaacttttaacttaaaaataactttagaact 2530157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7536685 - 7536717
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  7536685 aacaacttttaacttaaaaataactttagaact 7536717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 19361690 - 19361722
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  19361690 aacaacttttaacttaaaaataactttagaact 19361722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 28746350 - 28746318
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  28746350 aacaacttttaacttaaaaataactttagaact 28746318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29382608 - 29382576
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  29382608 aacaacttttaacttaaaaataactttagaact 29382576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30503791 - 30503759
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  30503791 aacaacttttaacttaaaaataactttagaact 30503759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30544134 - 30544102
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  30544134 aacaacttttaacttaaaaataactttagaact 30544102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37147107 - 37147139
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  37147107 aacaacttttaacttaaaaataactttagaact 37147139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7606 - 7574
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  7606 aacaacttttaacttaaaaataactttagaact 7574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15293 - 15261
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  15293 aacaacttttaacttaaaaataactttagaact 15261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11579234 - 11579266
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  11579234 aacaacttttaacttaaaaataactttagaact 11579266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36059308 - 36059276
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  36059308 aacaacttttaacttaaaaataactttagaact 36059276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37034866 - 37034898
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  37034866 aacaacttttaacttaaaaataactttagaact 37034898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38139353 - 38139385
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  38139353 aacaacttttaacttaaaaataactttagaact 38139385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41526351 - 41526383
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  41526351 aacaacttttaacttaaaaataactttagaact 41526383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42844320 - 42844352
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  42844320 aacaacttttaacttaaaaataactttagaact 42844352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42984032 - 42984064
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  42984032 aacaacttttaacttaaaaataactttagaact 42984064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4400097 - 4400065
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  4400097 aacaacttttaacttaaaaataactttagaact 4400065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 21134388 - 21134356
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  21134388 aacaacttttaacttaaaaataactttagaact 21134356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36765616 - 36765648
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  36765616 aacaacttttaacttaaaaataactttagaact 36765648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36769266 - 36769298
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  36769266 aacaacttttaacttaaaaataactttagaact 36769298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44651914 - 44651882
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  44651914 aacaacttttaacttaaaaataactttagaact 44651882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 5414594 - 5414562
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  5414594 aacaacttttaacttaaaaataactttagaact 5414562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7541147 - 7541179
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  7541147 aacaacttttaacttaaaaataactttagaact 7541179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17505528 - 17505560
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  17505528 aacaacttttaacttaaaaataactttagaact 17505560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28472263 - 28472295
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  28472263 aacaacttttaacttaaaaataactttagaact 28472295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29043249 - 29043281
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  29043249 aacaacttttaacttaaaaataactttagaact 29043281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34207035 - 34207003
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  34207035 aacaacttttaacttaaaaataactttagaact 34207003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34247787 - 34247755
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  34247787 aacaacttttaacttaaaaataactttagaact 34247755  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12101496 - 12101464
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  12101496 aacaacttttaacttaaaaataactttagaact 12101464  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35690244 - 35690212
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  35690244 aacaacttttaacttaaaaataactttagaact 35690212  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38361793 - 38361825
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  38361793 aacaacttttaacttaaaaataactttagaact 38361825  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39721302 - 39721334
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  39721302 aacaacttttaacttaaaaataactttagaact 39721334  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41990796 - 41990764
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  41990796 aacaacttttaacttaaaaataactttagaact 41990764  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43316548 - 43316516
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  43316548 aacaacttttaacttaaaaataactttagaact 43316516  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1118023 - 1118055
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  1118023 aacaacttttaacttaaaaataactttagaact 1118055  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2180061 - 2180093
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  2180061 aacaacttttaacttaaaaataactttagaact 2180093  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3243327 - 3243295
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  3243327 aacaacttttaacttaaaaataactttagaact 3243295  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 10120652 - 10120684
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  10120652 aacaacttttaacttaaaaataactttagaact 10120684  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35423829 - 35423861
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  35423829 aacaacttttaacttaaaaataacttaagaact 35423861  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38879179 - 38879211
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  38879179 aacaacttttaacttaaaaataactttagaact 38879211  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 40202258 - 40202290
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  40202258 aacaacttttaacttaaaaataactttagaact 40202290  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41452858 - 41452890
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  41452858 aacaacttttaacttaaaaataactttagaact 41452890  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24473583 - 24473551
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  24473583 aacaacttttaacttaaaaataactttagaact 24473551  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39879172 - 39879140
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  39879172 aacaacttttaacttaaaaataactttagaact 39879140  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43119146 - 43119114
Alignment:
Q  1 aacaacttttaacttaaaaataacttcagaact 33  Q
    |||||||||||||||||||||||||| ||||||    
T  43119146 aacaacttttaacttaaaaataactttagaact 43119114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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