View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_high_15 (Length: 250)
Name: NF17648_high_15
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_high_15 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 16633395 - 16633627
Alignment:
| Q |
14 |
agaataaaagataatgaaatgcagcggaatagaataaaaatttcattttagggtttgggtattttacaatagaacggatcaaactttttattccattgtt |
113 |
Q |
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| T |
16633395 |
agaatgaaagataatggaatggagcggaatagaataaaaacttcattttagaatttgggtattttacaacataacagatcaaactttttattccattgtt |
16633494 |
T |
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| Q |
114 |
tgaaaagtggatggaatgaaatatattataactttttcattccattattgcctttatataaccattaggtagaaaattttttaaggaactattaggcaga |
213 |
Q |
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| T |
16633495 |
taaaaagtggatggaatgaaatatattataacttttttatttcattattgcctttatataactattaggtagaaatttttttaaggaactattaggcaga |
16633594 |
T |
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| Q |
214 |
gttaaaaaa-gttaaatcttaaagttgtctttt |
245 |
Q |
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| T |
16633595 |
attaaaaaacgttaaatcttaaagttgtctttt |
16633627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 12432864 - 12432919
Alignment:
| Q |
103 |
attccattgtttgaaaagtggatggaatgaaatatattataactttttcattccatt |
159 |
Q |
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| T |
12432864 |
attccattgtttggaaagttgacggaatggaataaattataacttttt-attccatt |
12432919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 250
Target Start/End: Original strand, 38945895 - 38946108
Alignment:
| Q |
31 |
aatgcagcggaatagaataaaaatttcattttagggtttgggtattttacaatagaacggatcaaactttttattccattgtttgaaaagtggatggaat |
130 |
Q |
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| T |
38945895 |
aatggagcgaaatggaacaaaaacttcatttcattgtttaggtatttgatgatggaacagaacaaactttttattctattgattggaaagtggaaggaat |
38945994 |
T |
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| Q |
131 |
gaaatatattataactttttcattccattattgcctttatataaccattaggtagaaaattttttaaggaactattaggcagagttaaaaaagttaaatc |
230 |
Q |
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| T |
38945995 |
gaaatgtattatgacatttt-atttcaatattacccttatataactattaggtag-attttttttaaggaactat-----agaattaaaatagttaaatc |
38946087 |
T |
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| Q |
231 |
ttaaagttgtc-ttttctctt |
250 |
Q |
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| T |
38946088 |
ttaaagttgtcgttttctctt |
38946108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 21521563 - 21521454
Alignment:
| Q |
38 |
cggaatagaataaaaatttcattttagggtttgggtattttacaatagaacggatcaaactttttattccattgtttgaaaagtggatggaatgaaatat |
137 |
Q |
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| T |
21521563 |
cggaatggaataaatatttcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttgaaaagtgaacggaatggaatga |
21521464 |
T |
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| Q |
138 |
attataactt |
147 |
Q |
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| T |
21521463 |
attataactt |
21521454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 21532129 - 21532020
Alignment:
| Q |
38 |
cggaatagaataaaaatttcattttagggtttgggtattttacaatagaacggatcaaactttttattccattgtttgaaaagtggatggaatgaaatat |
137 |
Q |
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| T |
21532129 |
cggaatggaataaatatttcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttgaaaagtgaacggaatggaatga |
21532030 |
T |
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| Q |
138 |
attataactt |
147 |
Q |
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| T |
21532029 |
attataactt |
21532020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 42028694 - 42028748
Alignment:
| Q |
105 |
tccattgtttgaaaagtggatggaatgaaatatattataactttttcattccatt |
159 |
Q |
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| T |
42028694 |
tccattgtttggaaagtggacggaatgaaattagttataacttttttattccatt |
42028748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 2144600 - 2144655
Alignment:
| Q |
103 |
attccattgtttgaaaagtggatggaatgaaatatattataactttttcattccatt |
159 |
Q |
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| T |
2144600 |
attccattgtttggaaagttgacggaatggaataaattataacttttt-attccatt |
2144655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 23416347 - 23416440
Alignment:
| Q |
66 |
gtttgggtattttacaatagaacggatcaaactttttattccattgtttgaaaagtggatggaatgaaatatattataactttttcattccatt |
159 |
Q |
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| T |
23416347 |
gtttgggtattatacaatggagcggaacaaattacttattccattgtttggaaaatgaacggaatggaatgtgttataaattttttattccatt |
23416440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 28300779 - 28300834
Alignment:
| Q |
103 |
attccattgtttgaaaagtggatggaatgaaatatattataactttttcattccatt |
159 |
Q |
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| T |
28300779 |
attccattgtttggaaagttgacggaatggaataaattataacttttt-attccatt |
28300834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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