View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17648_high_8 (Length: 359)
Name: NF17648_high_8
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_high_8 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 35 - 359
Target Start/End: Complemental strand, 44828794 - 44828470
Alignment:
| Q |
35 |
ttctacttattgtgcatcattttatctacttcattaaaataatttaagtttctccttaactaaacatattatcttgtgactatttaatatattaggacgg |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44828794 |
ttctacttattgtgcatcattttatctacttcattaaaataatttaagtttctccttaactaaacatattatcttgtgactatttaatatattaggacgg |
44828695 |
T |
|
| Q |
135 |
tatttgatgaacatggtttaactgaggaagtgttgagtattgttaaggatgtcatcggaggtaccagttcagaaattcaggtaacgtagagtaatttaca |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44828694 |
tatttgatgaacatggtttaactgaggaagtgttgagtattgttaaggatgtcatcggaggtaccagttcagaaattcaggtaatgtagagtaatttaca |
44828595 |
T |
|
| Q |
235 |
agattaatatagctttgatgattgttaattctaatatgtattacaaatataagtttctttgtgatatgtgttgtattaattgcgtacgagcagctaattt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
44828594 |
agattaatatagctttgatgattgttaattctaatatgtattacaaaaataagtttctttgtgatatgtgttgtattaattacgtatgagcagctaattt |
44828495 |
T |
|
| Q |
335 |
tatgtcatggacaaatgttctcaat |
359 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
44828494 |
tatgtcatggacaaatgttctcaat |
44828470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University