View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_10 (Length: 407)
Name: NF17648_low_10
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 50572303 - 50571941
Alignment:
| Q |
16 |
gttcactggcacgtgcataagcctttccaacctgctcctcagcatccaatgacccttttttctgaggaaaaaataataattttgaagggtttaagcaaat |
115 |
Q |
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| T |
50572303 |
gttcaccggcacgtgcataagcctttccaacctgctcctcagcatccaatgacccttttttctgaggaaaaaataataattttgaagggtttaagcaaat |
50572204 |
T |
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| Q |
116 |
aacaaataataacaagtggtgagtatatgatctcatcgataaatacaggtttacaattccaaatgaatgaaaaatccctaaagagggtctagtgaaaagt |
215 |
Q |
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| T |
50572203 |
aacaa----------gtggtgagtatatgatctcattgataaatacaggtttacaattccaaatgaatgaaaaatccctaaagagggtctagtgaaaagt |
50572114 |
T |
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| Q |
216 |
gatctcacctgaagagaagcaacctcattctgcaaggattgaatgctactcaacttatcttggaaaagtttttctttttctgcaattacttgatcctttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50572113 |
gatctcacctgaagagaagcaacctcattctgcaaggattgaatgctactcaacttatcttggaaaagtttttctttttctgcaattacttgatcctttt |
50572014 |
T |
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| Q |
316 |
tcttcaattcttgtgttttctcactgatttgagactcttcaaaacaaaattaagtacaataacatgtattagc |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50572013 |
tcttcaattcttgtgttttctcactgatttgagactcttcaaaacaaaattaagtacaataacatgtattagc |
50571941 |
T |
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