View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_11 (Length: 383)
Name: NF17648_low_11
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 7 - 368
Target Start/End: Original strand, 40577116 - 40577477
Alignment:
| Q |
7 |
atactaaacgaagtcgaaggatttgttttataaaaaatagcaagccatggttgtgcacataaaacaacttctactggttacggcttttgttgtcctttat |
106 |
Q |
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| T |
40577116 |
atactaaacgaagtcgaaggatttgttttataaaaaatagcaagccatggttgtgcacataaaacaacttctactggttacggcttttgttgtcctttat |
40577215 |
T |
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| Q |
107 |
acaaaagcagaaactcaaccaaactgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaaggattgttctctagacaacacct |
206 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40577216 |
acgaaagcagaaactcaaccaaactgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaaggattgttctctagacaacacct |
40577315 |
T |
|
| Q |
207 |
ttctcatcgattgcaacaaaacatcttcaacctcaacagaggtaccattcttgccacagactaatcaaagtgttctaaacatctcacttaatggtgaact |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40577316 |
ttctcatcgattgcaacaaaacatcttcaacctcaacagaggtaccattcttgccacagactaatcaaagtgttctaaacatctcacttaatggtgaact |
40577415 |
T |
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| Q |
307 |
tcacgttgcatggccagtagccagctattgctattcaaaaaatggcacacaagtgaaccaaa |
368 |
Q |
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| T |
40577416 |
tcacgttgcatggccagtagccagctattgctattcaaaaaatggcacacaagtaaaccaaa |
40577477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 124 - 369
Target Start/End: Original strand, 40570810 - 40571055
Alignment:
| Q |
124 |
accaaactgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaaggattgttctctagacaacacctttctcatcgattgcaac |
223 |
Q |
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| T |
40570810 |
accaaattgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaacacctttctcattgattgcaac |
40570909 |
T |
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| Q |
224 |
aaaacatcttcaacctcaacagaggtaccattcttgccacagactaatcaaagtgttctaaacatctcacttaatggtgaacttcacgttgcatggccag |
323 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | | ||||||||||| |
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| T |
40570910 |
aaaacatcttcaacctcaacagacgtaccattcttgccacagactaatcaaagtgttctaaacatctcactcgacggtgaactgcgtgctgcatggccag |
40571009 |
T |
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| Q |
324 |
tagccagctattgctattcaaaaaatggcacacaagtgaaccaaat |
369 |
Q |
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|||| || ||||||||||| ||||||| ||| || ||| |||||| |
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| T |
40571010 |
tagcaagtgattgctattcagaaaatggtacaaaattgagccaaat |
40571055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 152 - 339
Target Start/End: Original strand, 40566145 - 40566338
Alignment:
| Q |
152 |
gtcactattcccttcccatttggaaccaccaaggattgttctctagacaacacctttctcatcgattgcaacaaaacatctt------caacctcaacag |
245 |
Q |
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||||| |||||||| |||||||||||||| ||| ||||||| || ||||| ||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
40566145 |
gtcaccattccctttccatttggaaccactaagaattgttccctcgacaatacctttctcattaattgcaacaaaacatcttcaactccaacctcaacac |
40566244 |
T |
|
| Q |
246 |
aggtaccattcttgccacagactaatcaaagtgttctaaacatctcacttaatggtgaacttcacgttgcatggccagtagccagctattgcta |
339 |
Q |
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| || || | |||| ||| |||||||| ||| ||||| |||||||| ||||||||| | |||||||||||||||||||||||| ||||||| |
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| T |
40566245 |
atgttccctacttggataagagtaatcaaaatgtcctaaatatctcactcaatggtgaattgcacgttgcatggccagtagccagcgattgcta |
40566338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 40595654 - 40595736
Alignment:
| Q |
266 |
actaatcaaagtgttctaaacatctcacttaatggtgaacttcacgttgcatggccagtagccagctattgctattcaaaaaa |
348 |
Q |
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||||||||| |||| |||| || ||||||||||||||||| || |||||||||||||||||||| |||||||| ||||||| |
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| T |
40595654 |
actaatcaacgtgtcttaaatatatcacttaatggtgaactgcatgttgcatggccagtagccagacattgctatccaaaaaa |
40595736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 40589257 - 40589324
Alignment:
| Q |
282 |
taaacatctcacttaatggtgaacttcacgttgcatggccagtagccagctattgctattcaaaaaat |
349 |
Q |
| |
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|||| ||| ||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
40589257 |
taaatatcacacttaacggtgaactacacgttgcatggccagtagccaaggattgctattcaaaaaat |
40589324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 40595537 - 40595607
Alignment:
| Q |
161 |
cccttcccatttggaaccaccaaggattgttctctagacaacacctttctcatcgattgcaacaaaacatc |
231 |
Q |
| |
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| T |
40595537 |
cccttcccatttggaatcaccaaagattgctccctagacaacgctttcctcatcaattgcaacaaaacatc |
40595607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 124 - 340
Target Start/End: Original strand, 8490477 - 8490693
Alignment:
| Q |
124 |
accaaactgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaaggattgttctctagacaacacctttctcatcgattgcaac |
223 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
8490477 |
accaaactgtccaacaaagtgtggctctgtcactattcccttcccatttggaaccaccaagagttgttctctagacaacacctttctcattgattgcaac |
8490576 |
T |
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| Q |
224 |
aaaacatcttcaacctcaacagaggtaccattcttgccacagactaatcaaagtgttctaaacatctcacttaatggtgaacttcacgttgcatggccag |
323 |
Q |
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| T |
8490577 |
aaaacgtcttcaacctcaacagacgtaccattcttgccacagagtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaa |
8490676 |
T |
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| Q |
324 |
tagccagctattgctat |
340 |
Q |
| |
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||| ||| |||||||| |
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| T |
8490677 |
taggcagtgattgctat |
8490693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 125 - 339
Target Start/End: Complemental strand, 2017562 - 2017336
Alignment:
| Q |
125 |
ccaaactgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaaggattgttctctagacaacacctttctcatcgattgcaaca |
224 |
Q |
| |
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|||||||| |||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| | |||||||| |||||||| |||||| || |
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| T |
2017562 |
ccaaactgcacaacaaagtgtggctctgtcacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcataaattgcacca |
2017463 |
T |
|
| Q |
225 |
aaaca------------tcttcaacctcaacagaggtaccattcttgccacagactaatcaaagtgttctaaacatctcacttaatggtgaacttcacgt |
312 |
Q |
| |
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|| || |||||||||||||| | |||| ||| ||||||| |||||||||| ||| ||||||||||| ||| |||||||||| | || |
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| T |
2017462 |
aagcatcttcttcttcttcttcaacctcaacccatatacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgt |
2017363 |
T |
|
| Q |
313 |
tgcatggccagtagccagctattgcta |
339 |
Q |
| |
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||||||||||||||||||| ||||||| |
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| T |
2017362 |
tgcatggccagtagccagcgattgcta |
2017336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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