View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_14 (Length: 352)
Name: NF17648_low_14
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 77 - 270
Target Start/End: Complemental strand, 33272339 - 33272149
Alignment:
| Q |
77 |
attgtcctatgatctt-catcatgttgtcgttaattcttgaagaacaatgtgtgtgtatgttggtggtgcaacgtacattgccttgaatgttgccgagaa |
175 |
Q |
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| T |
33272339 |
attgtcctatgatttttcgtcatgttgtcgttaattcttgaagaacaatgtgtgtgtatgttggtggtgcaacgtacattgccttgaatgttgccgagaa |
33272240 |
T |
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| Q |
176 |
aataaatatacaagattggaaatataaattgtattcagaatgnnnnnnntgtgtttacgtcaaagatctacataacttatgttccatttttccat |
270 |
Q |
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| T |
33272239 |
----aatatacaagattggaaatataaattgtattcagaatgaaaaaaatgtgtttacatcaaagatctacataacttgtgttccatttttccat |
33272149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 33272544 - 33272466
Alignment:
| Q |
1 |
gagttcaattctcatgtgagacggttgtaaaatgatcattgatatcaccattattaatattgatttttctttgccaatt |
79 |
Q |
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| T |
33272544 |
gagttcaattttcatgtgagacggttgtaaaatgatcattgatatcaccattattaatattgatttttatttgccaatt |
33272466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 336
Target Start/End: Complemental strand, 33272161 - 33272132
Alignment:
| Q |
307 |
tccatttttccatttttgtcacgaactaac |
336 |
Q |
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| T |
33272161 |
tccatttttccatttttgtcacgaactaac |
33272132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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