View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_16 (Length: 314)
Name: NF17648_low_16
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 35 - 314
Target Start/End: Original strand, 44828215 - 44828494
Alignment:
| Q |
35 |
ttacaaaaataaagacacacaatataatcattatcttattatagacaacaatattgtggtgnnnnnnnnggcaaaatattgatannnnnnncttgtattt |
134 |
Q |
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| T |
44828215 |
ttacaaaaataaagacacacaatataatcattatcttattatagacaacaatattgtggtgaaaaaaaaggcaaaatattgatatttttttcttgtattt |
44828314 |
T |
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| Q |
135 |
accatgcaacgacgacagtaaaagttgtcaaaagtatctaaagagacactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgat |
234 |
Q |
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| T |
44828315 |
accatgcaacgacgacagtaaaagttgtcaaaagtatctaaagagacactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgat |
44828414 |
T |
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| Q |
235 |
cttcatcattttggtccttttccttgatatttttatatcgctcctgcatattttgattgagaacatttgtccatgacata |
314 |
Q |
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| T |
44828415 |
cttcatcattttggtccttttccttgatatttttatatcgctcctgcatattttgattgagaacatttgtccatgacata |
44828494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 304
Target Start/End: Original strand, 8370640 - 8370763
Alignment:
| Q |
181 |
cactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctg |
280 |
Q |
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| T |
8370640 |
cacttaagcttttgttcaaatatatctcagtttgaggtccattttctccaaaatcttcagaatgttggtccttttccttgatattttgataatgctcctg |
8370739 |
T |
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| Q |
281 |
catattttgattgagaacatttgt |
304 |
Q |
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| T |
8370740 |
catattttgattgaaaatatttgt |
8370763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 304
Target Start/End: Original strand, 8372042 - 8372165
Alignment:
| Q |
181 |
cactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctg |
280 |
Q |
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| T |
8372042 |
cactcaagcttttgttcaaacatatctcagtttgagatccattttctccaaaatcttcagaatgttgatctttttccctaatatttcgataacgctcctg |
8372141 |
T |
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| Q |
281 |
catattttgattgagaacatttgt |
304 |
Q |
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| T |
8372142 |
catattttgattgaaaatatttgt |
8372165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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