View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_19 (Length: 262)
Name: NF17648_low_19
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_19 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 20479071 - 20478826
Alignment:
| Q |
1 |
agtgttggttcttttgagaggaagttagagaaagcacaagaaggactaggcattcaacatcatgattttgtacgtgttacgtattcttccgaaactgact |
100 |
Q |
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| T |
20479071 |
agtgttgattcttttgagaggaagttagagaaagcacaagaaggactaggcattcaacatcatgattttgtacgtgttacgtattcttccgaaactgact |
20478972 |
T |
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| Q |
101 |
ggttgttctcattgtttatcttattatctggaatcctgatgatttttggagctgtcagtaataatggaattggaaaacaacatgttactaaagtcgacaa |
200 |
Q |
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| T |
20478971 |
ggttgttctcattgtttatcttattatctggaatcctgatgatttttggagctgtcagtaataatggaattggaaaacaacatgttactaaagtcgacaa |
20478872 |
T |
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| Q |
201 |
agatgccgaaaacaaggtctattttaaagatgttgctggctgtgat |
246 |
Q |
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| T |
20478871 |
agatgccgaaaacaaggtctattttaaagatgttgctggctgtgat |
20478826 |
T |
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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 29727742 - 29727827
Alignment:
| Q |
9 |
ttcttttgagaggaagttagagaaagcacaagaaggactaggcattcaacatcatgattttgtacgtgttacgtattcttccgaaa |
94 |
Q |
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| T |
29727742 |
ttcttttgagaggaagttagagaaagcacaagaaggactaggcattgatcatcatgattttgtacgtgttacttattcttctgaaa |
29727827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 246
Target Start/End: Original strand, 29728080 - 29728111
Alignment:
| Q |
215 |
aggtctattttaaagatgttgctggctgtgat |
246 |
Q |
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| T |
29728080 |
aggtctattttaaagatgttgctggctgtgat |
29728111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 38514535 - 38514489
Alignment:
| Q |
172 |
ggaaaacaacatgttactaaagtcgacaaagatgccgaaaacaaggt |
218 |
Q |
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| T |
38514535 |
ggaaaaccacattttactaaagtagacaaagatgccaaaaacaaggt |
38514489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 16837308 - 16837383
Alignment:
| Q |
27 |
agagaaagcacaagaaggactaggcattcaacatcatgattttgtacgtgttacgtattcttccgaaactgactgg |
102 |
Q |
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| T |
16837308 |
agaggaagctcaagaaggactaggcattgatcatcatgattttgtacgtgttacttattcttctgaaaccgactgg |
16837383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 244
Target Start/End: Original strand, 16837613 - 16837642
Alignment:
| Q |
215 |
aggtctattttaaagatgttgctggctgtg |
244 |
Q |
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| T |
16837613 |
aggtctattttaaagatgttgctggctgtg |
16837642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 246
Target Start/End: Original strand, 2606 - 2637
Alignment:
| Q |
215 |
aggtctattttaaagatgttgctggctgtgat |
246 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2606 |
aggtctattttaaagatgttgctggctgtgat |
2637 |
T |
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