View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_2 (Length: 661)
Name: NF17648_low_2
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 18 - 645
Target Start/End: Original strand, 33170766 - 33171400
Alignment:
| Q |
18 |
agttatagtttgaacaccaggacttaggacaaaagagtggcattagaaaattcctagttgattcaaatttcttggtgttacattacctggattacaaaac |
117 |
Q |
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| T |
33170766 |
agttatagtttgaacaccaggacttaggataaaagagtggcattagaaaattcctagttgattcagatttcttggtgttacattacctggattacaaaac |
33170865 |
T |
|
| Q |
118 |
cttctagtccctcaaatttgtctatagcaatagccatctgaattccatgatttgctgcatttaatggaacaaatgccatgtcttggaccagactctcctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33170866 |
cttctagtccctcaaatttgtctatagcaatagccatctgaattccatgatttgctgcatttaatggaacaaatgccatgtcttggaccagactctcctg |
33170965 |
T |
|
| Q |
218 |
gagtttatttagtccttgtgaaagagcatcttcggcttgctgagacgacaggtgaagttttttaatgctaaacatctgttcatcagacaaaggctcaagt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33170966 |
gagtttatttagtccttgtgaaagagcatcttcggcttgctgagacgacaggtgaagttttttgatgctaaacatctgttcatcagacaaaggctcaagt |
33171065 |
T |
|
| Q |
318 |
tgtggcacaatgagctgtagcagnnnnnnnnnctaataatggttagtgattcgttgaggt--------taccgacttttaatctaattcgctattaagat |
409 |
Q |
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| T |
33171066 |
tgtggcacaatgagctgtagcag-aaaaaaaactaataatggttagtgattcgttgaggtttcgagagtaccgacttttaatctaatttgctattaagat |
33171164 |
T |
|
| Q |
410 |
cagatttgtacatttagaagctgggatgggcgagatcctccgatccataggaaaagtcgctctacggatggtttccacacaccggagattaaatagaggg |
509 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33171165 |
cagatttgtacatttagaagctgtgatggccgagatcctccgatccataggaaaagtcgctctacggatggtttccacacaccggagattaaatagaggg |
33171264 |
T |
|
| Q |
510 |
gatcagcctttgcagcatccgttttcattctgaaaagatccgagtaatgattcaagacactctgaacaactagacggagctgcacttcggacgcattagt |
609 |
Q |
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| T |
33171265 |
gatcagcctttgcagcatccgttttcattctgaaaagatccgagtaatgattcaagacactctgaacaactagacggagctgcacttcggacgcattagt |
33171364 |
T |
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| Q |
610 |
ttgaaatgcatttctgagctcttcattccgcctatg |
645 |
Q |
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| T |
33171365 |
ttgaaatgcatttctgagctcttcattccgcctatg |
33171400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 416 - 624
Target Start/End: Original strand, 25355778 - 25355986
Alignment:
| Q |
416 |
tgtacatttagaagctgggatgggcgagatcctccgatccataggaaaagtcgctctacggatggtttccacacaccggagattaaatagaggggatcag |
515 |
Q |
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||||||||||||| || ||||| ||||||||||||||||| || ||||| || || || | || |||||| || || ||||||||||||| ||||| |
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| T |
25355778 |
tgtacatttagaatttgtgatggacgagatcctccgatccaaagaaaaaggcgttcgaccggtgatttccatacgccagagattaaatagaaaacatcag |
25355877 |
T |
|
| Q |
516 |
cctttgcagcatccgttttcattctgaaaagatccgagtaatgattcaagacactctgaacaactagacggagctgcacttcggacgcattagtttgaaa |
615 |
Q |
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|||||||||| || | ||||||||||||||||| ||||| || |||||| ||||| ||||| |||| | || || | || || ||||||||||| || |
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| T |
25355878 |
cctttgcagcttcagctttcattctgaaaagatttgagtattggttcaagctactctcaacaagtagatgaagttgtatatcagatgcattagtttgcaa |
25355977 |
T |
|
| Q |
616 |
tgcatttct |
624 |
Q |
| |
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||||||||| |
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|
| T |
25355978 |
tgcatttct |
25355986 |
T |
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Back To:
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