View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_23 (Length: 247)
Name: NF17648_low_23
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 8525555 - 8525679
Alignment:
| Q |
4 |
cacaaatgaaatatattgtagagtcatcttaagannnnnnnnncatattattacacacctgaatgtatatttgtagaatgatcgtgaattcaatgaatgt |
103 |
Q |
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| T |
8525555 |
cacaattgaaatatattgtagagtcatcttaagatttttttttcatattattacacacctgaatgtatatgtgtagaatgatcgtgaattcaatgaatgt |
8525654 |
T |
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| Q |
104 |
ataatcttaatataattgaatatac |
128 |
Q |
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| T |
8525655 |
ataatcttcatacaattgaagatac |
8525679 |
T |
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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 8525685 - 8525734
Alignment:
| Q |
165 |
tacaattgttcctcatctgttgactaggaagctgcagtgtgattatatac |
214 |
Q |
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| T |
8525685 |
tacaatcgttcctcatctattgactaggaagctgcagtgtgattatatac |
8525734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 12251750 - 12251787
Alignment:
| Q |
71 |
tatttgtagaatgatcgtgaattcaatgaatgtataat |
108 |
Q |
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| T |
12251750 |
tatttgtagactgatcgtgaattcaatgaaggtataat |
12251787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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