View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_24 (Length: 233)
Name: NF17648_low_24
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 16633743 - 16633860
Alignment:
| Q |
13 |
gagaagaagtgatgcacttgttttttaataaagacataaagatgggtttggctgataaaaaattaacacatgaaaatgggtttttaagacataagaaaca |
112 |
Q |
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| T |
16633743 |
gagaagaagtgatgcacttgttttttaataaagacataaaaatgggtttggctgataaaaaattaacacatgaaaatggatttttaagacataagaaaca |
16633842 |
T |
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| Q |
113 |
ataacacatgaaaaatgt |
130 |
Q |
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| T |
16633843 |
ataacacatgaaaaatgt |
16633860 |
T |
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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 16633860 - 16633940
Alignment:
| Q |
83 |
tgaaaatgggtttttaagacataagaaacaataacacatgaaaaatgtaaattatcatatgatgggttgttaatgagatga |
163 |
Q |
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| T |
16633860 |
tgaaaataggtttttatgacataagaaacaataacacatgaaaaatgtaaattatcatatgatgggttgttaatgagatga |
16633940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 16633960 - 16634022
Alignment:
| Q |
155 |
atgagatgacgtatgcaacgagttttaagaatcacaaataggaaacatgaacaaagcacatgt |
217 |
Q |
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| T |
16633960 |
atgagatgacgtatgcaacgagttttaagaatcacaaataggagtcaggaacaaagcacatgt |
16634022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 38946334 - 38946416
Alignment:
| Q |
100 |
gacataagaaacaataacacatgaaaaatgtaaattatcatatgatgggttgttaatgagatgacgt-atgcaacgagtttta |
181 |
Q |
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| T |
38946334 |
gacataagaaacaataacaaatgaaaaatgtaaattaacatatgatgggttgttaatgagatgacgtgatgcaacgagtttta |
38946416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 38946220 - 38946300
Alignment:
| Q |
16 |
aagaagtgatgcacttgttttttaataaagacataaagatgggtttggctgataaaaaattaacacatgaaaatgggttttt |
97 |
Q |
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| T |
38946220 |
aagaagtgatgcactagtttt-taataaagctataaaaatgggtttggctgataaaaaattaacacatgaatatgtgttttt |
38946300 |
T |
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