View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_3 (Length: 609)
Name: NF17648_low_3
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 20 - 589
Target Start/End: Original strand, 48951301 - 48951870
Alignment:
| Q |
20 |
gatctgtttcacttgcttgtccttttctctatttcacaggcactagaacgtctttcctttggaaaaagtacaattagggatacactgctagcgcaaaata |
119 |
Q |
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| T |
48951301 |
gatctgtttcacttgcttgtccttttctctatttcgcaggcactagaacgtctttcctttggaaaaagtacaattagggatacactgctagcgcaaaata |
48951400 |
T |
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| Q |
120 |
gaatattgttattttggtattgtaccacctaccttctccttgagaaaaacaagcccaaataccagcaacttgaaacaacccctcctgaccacagtaaacc |
219 |
Q |
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| T |
48951401 |
gaatattgttattttggtattgtaccacctaccttctccttgagaaaaacaagcccaaataccagcaacttgaaacaacccctcctgaccacagtaaacc |
48951500 |
T |
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| Q |
220 |
acatttaaaacccgaggagttaaatcctgaacaagttgatcagacacatgaagcaccagaggtcagccaagttggttcggacgagccccttgagtcaggt |
319 |
Q |
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| T |
48951501 |
acatttaaaactcgaggagttaaatcctgaacaagttgatcagacacatgaagcaccagaggtcagccaagttggttcggacgagccgcttgagtcacct |
48951600 |
T |
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| Q |
320 |
gaattagaccctgttggctcatttatcctagaaggtttgtaatcagctgggcactactactgttcatatcagacattcatctatttaataatttatctaa |
419 |
Q |
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| T |
48951601 |
gaattagaccctgttggctcatttatcctagaaggtttgtaatcagctgggcactactactgttcatatcagacattcatctatttaataatttatctaa |
48951700 |
T |
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| Q |
420 |
tacaggtgctcagtagagtgatatctttgcaaaggatgacctgcaattactgagaagtgggccttctcctatagaacaagaccacaatcactgatttcca |
519 |
Q |
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| T |
48951701 |
tacaggtgctcagtagagtgatatctttgcaaaggatgacctgcaattactgagaagtgagccttctcctatagaacaagaccacaatcactgatttcca |
48951800 |
T |
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| Q |
520 |
cgatgtcattatcggacattcaaaaaataataatcataaagcttatgatatcagatttttagctggctgt |
589 |
Q |
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| T |
48951801 |
cgatgtcattatcggacattcaaaaaataataatcataaagcttatgatatcagatttttagctggctgt |
48951870 |
T |
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