View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_4 (Length: 530)
Name: NF17648_low_4
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 512
Target Start/End: Complemental strand, 48248560 - 48248056
Alignment:
| Q |
11 |
cagagacggtctcgttgacggttgtggattggttttccgatgaagatttgcggtggctggctttgtgaccaccaagtgcttgataagatggaaaagcttt |
110 |
Q |
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| T |
48248560 |
cagagatggtctcgttgacggttgtggattggttttccgatgaagatttgcggtggctggctttgtgaccaccaagtgcttgataagatggaaaagcttt |
48248461 |
T |
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| Q |
111 |
gttacaaacactgcacttgtgattgagctgcttcaacggtgatgattcaatttgtttgttgctttgtgagagcatgatgagacagagagcaagatattct |
210 |
Q |
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| T |
48248460 |
gttgcaaacactgcacttgtgattga---gcttcaacggtgatgattgaatttggttgttgctttgtgagagcatgatgagacagagagcaagatattct |
48248364 |
T |
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| Q |
211 |
tcttcagtgggtgggt------taccaatacgcggtcgttttgatcgtttctttttaaccaaagactcacgttcttgatcttgattttcttcttgtttga |
304 |
Q |
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| T |
48248363 |
tcttcagtgggtgggttaccaataccaatacgcggtcgttttgatcgtttctttttaaccaaagactcacgt------tcttgattttcttcttgtttga |
48248270 |
T |
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| Q |
305 |
aacgtgggaat------ggaatagtagtagtagctcctgtgggagaagaattcagagtttgtaattctaaagccatcaagtatagtagttgaggatagaa |
398 |
Q |
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| T |
48248269 |
aacgtgggaatggaataggaatagtagtagtagctcctgtgggagaagaattaagagtttgtaattctaaagccatcaagtatagtagttgaggatagaa |
48248170 |
T |
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| Q |
399 |
aatgagtttttattgttgagtgatgatgaatgagaatgttgagagggtaannnnnnntttatatagggaagtgaagtgaagtgattgagttggtgacttg |
498 |
Q |
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| T |
48248169 |
aatgagtttttgttgttgagtgatgatgaatgagaatgttgagaggggaagggggggtttatatagggaagtgaagtgaagtgattgagttggtgacttg |
48248070 |
T |
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| Q |
499 |
gtgagggggaaaaa |
512 |
Q |
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| T |
48248069 |
gtgaggggggaaaa |
48248056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 5294607 - 5294569
Alignment:
| Q |
181 |
agcatgatgagacagagagcaagatattcttcttcagtg |
219 |
Q |
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| T |
5294607 |
agcatgatgagacaaagagcgagatattcttcttcagtg |
5294569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 47436028 - 47436080
Alignment:
| Q |
61 |
cggtggctggctttgtgaccaccaagtgcttgataagatggaaaagctttgtt |
113 |
Q |
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| T |
47436028 |
cggtgactggctttgtgtccacctagggcttgataagatgaaaaagctttgtt |
47436080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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