View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_5 (Length: 486)
Name: NF17648_low_5
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 131508 - 131217
Alignment:
| Q |
18 |
gaagtgaaactcataatgcattatgctaatgccaaagtgaatcaccaggtaacctattttcatcagtatttatatttatttacatacatataaggattgg |
117 |
Q |
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| T |
131508 |
gaagtgaaactcataatgcattatgctaatgccaaagtgaatcaccaggtaacctattttcatcagtatttatatttatttacatacatataaggattgg |
131409 |
T |
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| Q |
118 |
aattgatgattaataagtgtgtttgtgattgtaatatattgcagaaac---caggctcctcaagccatattccttacatggcaacaccgccggcagtccc |
214 |
Q |
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| T |
131408 |
aattgatgattaataagtgtgtttgtgatggtaatatattgcagaaacctgcaggctcctcaagccatattccttacatggcaacaccgccggcagtccc |
131309 |
T |
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| Q |
215 |
gttatataatcaggttccttcctactacccacagcaacaaccacactctaattatcacaatccagcaatacctgctgctgctgcttctgctt |
306 |
Q |
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| T |
131308 |
gttatataatcaggttccttcctactacccacagcaacaaccacactctaattatcacaatccagcaatacctgctgctgctgcttctgctt |
131217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 374 - 475
Target Start/End: Complemental strand, 131149 - 131048
Alignment:
| Q |
374 |
gccataccctcctccccactcttatcctccatcttcagcctatccaccgccttcataccctccacctccaggttatcctccaaacgctggtaagtaattc |
473 |
Q |
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| T |
131149 |
gccataccctcctccccactcttatcctccatcttcagcctatccaccgccttcataccctccacctacaggttatcctccaaacgctggtaagtaattc |
131050 |
T |
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| Q |
474 |
tt |
475 |
Q |
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| T |
131049 |
tt |
131048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 113 - 291
Target Start/End: Original strand, 161543 - 161720
Alignment:
| Q |
113 |
attggaattgatgattaataagtgtgtttgtgattgtaatatattgcagaaaccaggctcctcaagccatattccttacatggcaa---caccgccggca |
209 |
Q |
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| T |
161543 |
attggaattgatc-ttaatgagtgtgtttgggatgctaatatattgcagaaaccaggctcctcaagccatactccctatacagcaatgccaacgccggca |
161641 |
T |
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| Q |
210 |
gtcccgttatataatcaggttccttcctactacccacagcaacaaccacactctaattatcacaatccagcaatacctgctg |
291 |
Q |
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| T |
161642 |
gtcccatcatataatcacgttccttcctactaccca---caacaaccacactctaattatcaccatccaacaacacctgctg |
161720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 378 - 475
Target Start/End: Original strand, 161903 - 162000
Alignment:
| Q |
378 |
taccctcctccccactcttatcctccatcttcagcctatccaccgccttcataccctccacctccaggttatcctccaaacgctggtaagtaattctt |
475 |
Q |
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| T |
161903 |
taccctcctccccactcttatccgccatcttcagcttatccaccaccatcataccctccacctgcaggttatcctccaaacactggtaagtaattctt |
162000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 161479 - 161512
Alignment:
| Q |
40 |
atgctaatgccaaagtgaatcaccaggtaaccta |
73 |
Q |
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| T |
161479 |
atgccaatgccaaagtgaatcaccaggtaaccta |
161512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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