View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_6 (Length: 482)
Name: NF17648_low_6
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 473
Target Start/End: Original strand, 33268190 - 33268647
Alignment:
| Q |
16 |
gttctactctagaagccccacaaggtagtacagaacaaaaattgcattatttaatccccaaaacattttcgtttagtcttgttaggaaccaaaaatacag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| |
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| T |
33268190 |
gttctactctagaagccccacaaggtagtacagaacaaaaattgcattatttaatccctataccattttcgtttagtcttgttaggaaccaaaaatacag |
33268289 |
T |
|
| Q |
116 |
gcaatttttacggggattaaaaatgttgatggaaaaaatttcaaggactaaaaatgctgacatagataggttgggttgtgtttgggttttttaagaaaag |
215 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
33268290 |
gcaatttttacgggaattaaaaatgttgatggaaaaattttgaaggattaaaaatgctgacataaataggttgggttgtgtttgggtttcttaagaaaag |
33268389 |
T |
|
| Q |
216 |
gatgaacaacttacagcaacaagaagaccagttactactgatgcaaacaagactccagagaaagcaccaatgcaagcaaggaagtcaaatttgtcaactt |
315 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33268390 |
gatgaacaacttacagcaacaagaagaccagtttctactgatacaaacaagacaccaaagaaagcaccaatgcaagcaaggaagtcaaatttgtcaactt |
33268489 |
T |
|
| Q |
316 |
tccatatatagcaagcttctcttatgtcgattaatcctggaagtgcagagaggattatagaagcaagtatagccacaggtgtgtaatataacagccttgt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33268490 |
tccatatatagcaagcttctcttatgtcgattaatcctggaagtgcagagaggattatagaagcaagtatagccacaggtgtgtaatataacagccttgt |
33268589 |
T |
|
| Q |
416 |
aaacaattccaaacaaagaatcactgttatagccatcacaatatttgatactgatgat |
473 |
Q |
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| T |
33268590 |
aaacaattccaaacacagaatcactgttatagccatcacaatatttgatactgatgat |
33268647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 38945091 - 38945047
Alignment:
| Q |
132 |
ttaaaaatgttgatggaaaaaattt-caaggactaaaaatgctga |
175 |
Q |
| |
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||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
38945091 |
ttaaaaatgttgatggaaaaaatttatagggactaaaaatgctga |
38945047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 224 - 468
Target Start/End: Original strand, 25705249 - 25705493
Alignment:
| Q |
224 |
acttacagcaacaagaagaccagttactactgatgcaaacaagactccagagaaagcaccaatgcaagcaaggaagtcaaatttgtcaactttccatata |
323 |
Q |
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|||||| ||||| || |||||| | |||| |||||||||||||| ||| |||||||| ||||| ||||| ||||| |||||||| || ||||| ||| |
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| T |
25705249 |
acttactgcaactagcagaccaatctctacggatgcaaacaagacgccaacaaaagcaccgatgcaggcaagaaagtctaatttgtcgaccttccagata |
25705348 |
T |
|
| Q |
324 |
tagcaagcttctcttatgtcgattaatcctggaagtgcagagaggattatagaagcaagtatagccacaggtgtgtaatataacagccttgtaaacaatt |
423 |
Q |
| |
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|||| ||| || |||| || |||||||| |||||||| |||||||| |||| |||||| ||||||| ||||||||| ||||| ||||||| ||| |||| |
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| T |
25705349 |
tagcgagcctcgtttatatcaattaatccaggaagtgcggagaggatgatagcagcaaggatagccataggtgtgtagtataatagccttgcaaataatt |
25705448 |
T |
|
| Q |
424 |
ccaaacaaagaatcactgttatagccatcacaatatttgatactg |
468 |
Q |
| |
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|| | | |||||| || || |||||||||||||||||||||| |
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|
| T |
25705449 |
gcaggaacaaaatcacagtaattgccatcacaatatttgatactg |
25705493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 38566586 - 38566538
Alignment:
| Q |
128 |
gggattaaaaatgttgatggaaaaaatttcaaggactaaaaatgctgac |
176 |
Q |
| |
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|||| ||||||||||||||||||| || || ||||||||||||||||| |
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| T |
38566586 |
gggactaaaaatgttgatggaaaattttacagggactaaaaatgctgac |
38566538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 36808378 - 36808330
Alignment:
| Q |
128 |
gggattaaaaatgttgatggaaaaaatttcaaggactaaaaatgctgac |
176 |
Q |
| |
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|||| |||||||||||||||||||| || ||||||||||||||||||| |
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| T |
36808378 |
gggactaaaaatgttgatggaaaaatttataaggactaaaaatgctgac |
36808330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 38443042 - 38442990
Alignment:
| Q |
118 |
aatttttacggggattaaaaatgttgatggaaaaaatttcaaggactaaaaat |
170 |
Q |
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|||||||| |||||||||||||||||||||||| || ||||||||||||| |
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| T |
38443042 |
aatttttatagggattaaaaatgttgatggaaaattttataaggactaaaaat |
38442990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 34321168 - 34321111
Alignment:
| Q |
120 |
tttttacggggattaaaaatgttgatggaaaaaa--tttcaaggactaaaaatgctga |
175 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| || || |||||||||||||||| |
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|
| T |
34321168 |
tttttacagggattaaaaatgttgatgaaaaaaaatttacagggactaaaaatgctga |
34321111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 10675468 - 10675516
Alignment:
| Q |
128 |
gggattaaaaatgttgatggaaaaaattt-caaggactaaaaatgctga |
175 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||||||||||||||| |
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| T |
10675468 |
gggattaaaaatgttgatggaaaaattttatagggactaaaaatgctga |
10675516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 11688137 - 11688089
Alignment:
| Q |
128 |
gggattaaaaatgttgatggaaaaaattt-caaggactaaaaatgctga |
175 |
Q |
| |
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|||| |||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
11688137 |
gggactaaaaatgttgatggaaaaattttataaggactaaaaatgctga |
11688089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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