View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_7 (Length: 465)
Name: NF17648_low_7
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_7 |
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| [»] scaffold0360 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 5840386 - 5840837
Alignment:
| Q |
1 |
attctattaatattttaaaatagtcttgatttgaactgggtaaaggaagtggacgagattgtggacgagatcaaagtcttatcttggcaatgaagtttaa |
100 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
5840386 |
attctattaatattttaaaatagtcttaatttgaaccgggtaaagtaagtggacgagattgtggaggaggtcaaagtcttatcttggcaatgaagttta- |
5840484 |
T |
|
| Q |
101 |
ttatcaaggttgaggaacgcctcgtgtctctgctatgagtgatgttggaacgccctaaaggagtgtataaggagagggtaacttatgtgatctttgttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5840485 |
---tcaaggttgaggaacgcctcgtgtctctgctatgagtgatgttggaacgccctaaaggagtgtataaggagagggtaacttatgtgatctttgttct |
5840581 |
T |
|
| Q |
201 |
tgaggatggtggtttttgtagtggctttgttttctacttgctgctgcatttttg-tttttcttctgcccgtgttgccttctttgcgctaggttgttgttt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5840582 |
tgaggatggtggtttttgtagtggctttgttttctacttgctgctgcatttttgttttttctgctgcccgtgttgccttctttgcgctaggttgttgttt |
5840681 |
T |
|
| Q |
300 |
aagcggtttggccttgattggcttttttgtattgttccccagctcttttactgcacttctgctgc-ggggggcttttgataaataaatattgctttttc- |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
5840682 |
aagcggtttggccttgattggcttttttgtattgttccccagctcttttactgcacttctgctgcgggggggcttttgataaataaatattgttttttca |
5840781 |
T |
|
| Q |
398 |
-nnnnnnnnnnnnnnntgtatgtctttgtttaaagtttttcaattaggtcattgtc |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
5840782 |
aaaaaaataaaaaaaatgtatgtctttgtttaaagtttttcaattaggtcattgtc |
5840837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 288 - 458
Target Start/End: Original strand, 5846813 - 5846989
Alignment:
| Q |
288 |
aggttgttgtttaagcggtttggccttgattggcttttttgtattgttccccagct------cttttactgcacttctgctgcggggggcttttgataaa |
381 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |
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| T |
5846813 |
aggttgttgtttaagcggtttggccttgattcgcttttttgtattgttccccatctcttttacttttactgcacttctgctgcgggggggctttgataaa |
5846912 |
T |
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| Q |
382 |
taaatattgctttttcnnnnnnnnnnnnnnntgtatgtctttgtttaaagtttttcaattaggtcattgtccctatg |
458 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5846913 |
taaatattgctttttcaaaaaaaaaaaaaaatgtctgtctttgtttaaagtttttcaattaggtcattgtctctatg |
5846989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0360 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: scaffold0360
Description:
Target: scaffold0360; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4819 - 4600
Alignment:
| Q |
1 |
attctattaatattttaaaatagtcttgatttgaactgggtaaaggaagtggacgagattgtggacgagatcaaagtcttatcttggcaatgaagtttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
4819 |
attctattaatattttaaaatagtcttaatttgaaccgggtaaaggaagtggacgagattgtggaggaggtcaaagtcttatcttggcaatgaagttta- |
4721 |
T |
|
| Q |
101 |
ttatcaaggttgaggaacgcctcgtgtctctgctatgagtgatgttggaacgccctaaaggagtgtataaggagagggtaacttatgtgatctttgttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4720 |
---tcaaggttgaggaacgcctcgtgtctctgctatgagtgatgttggaacgccctaaaggagtgtataaggagagggtaacttatgtgatctttgttct |
4624 |
T |
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| Q |
201 |
tgaggatggtggtttttgtagtgg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
4623 |
tgaggatggtggtttttgtagtgg |
4600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 39 - 386
Target Start/End: Complemental strand, 6350192 - 6349858
Alignment:
| Q |
39 |
ggtaaaggaagtggacgagattgtggacgagatcaaagtcttatcttggcaatgaagtttaattatcaaggttgaggaacgcctcgtgtctctgctatga |
138 |
Q |
| |
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|||||||||||||||| |||||||||| ||| |||||||||||||||||||||| ||||| |||||| ||||||||||| |||||||| |||||| |
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| T |
6350192 |
ggtaaaggaagtggacaagattgtggaggaggtcaaagtcttatcttggcaatggtgttta----tcaagggagaggaacgccttgtgtctctactatga |
6350097 |
T |
|
| Q |
139 |
gtgatgttggaacgccctaaaggagtgtataaggagagggtaacttatgtgatc-tttgttcttgaggatggtggtttttgtagtggctttgttttctac |
237 |
Q |
| |
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||| ||||||||| ||||| |||||||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
6350096 |
gtggtgttggaac---ctaaa--------taaggagagggtaacttaggtggccctttgttcttgaggatggtggtttctgtagtggcttagttttctat |
6350008 |
T |
|
| Q |
238 |
ttgctgctgcatttttgtttttcttctgcc--cgtgttgccttctttgcgctaggttgttgtttaagcggtttggccttgattggcttttttgtattgtt |
335 |
Q |
| |
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|||||||||| ||||||||||||| ||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||| ||| ||| ||||| ||| |
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| T |
6350007 |
ttgctgctgcttttttgtttttctgctgcctgtgtgttgccttctatgcgccaggttgttgtttaaggggtttggccttgataggc-tttgtgtatggtt |
6349909 |
T |
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| Q |
336 |
ccccagctcttttactgcacttctgctgcggggggcttttgataaataaat |
386 |
Q |
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|| | ||||||| |||||||||||||| |||| |||||||| ||||||| |
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| T |
6349908 |
ccataactctttttatgcacttctgctgcaggggacttttgattaataaat |
6349858 |
T |
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