View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_8 (Length: 455)
Name: NF17648_low_8
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_8 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 5 - 455
Target Start/End: Complemental strand, 20479519 - 20479066
Alignment:
| Q |
5 |
tagataattctcaaaaccctagctagcgatcttctcttctttccatagttccactctcgcaatcgcctcacacataatgggaaatcataagaagnnnnnn |
104 |
Q |
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| T |
20479519 |
tagataactctcaaaaccctagctagcgatcttctcttctttccatagttccactctcgcaatcgcatcgcacataatgggaaatcataagaagaaaaaa |
20479420 |
T |
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| Q |
105 |
ncgactcaaaagaag---ggtcaaactctagcacagaggatgaagatggtgttggtaggaagttttcaagaagcattcaagnnnnnnnngaatggaaaga |
201 |
Q |
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| T |
20479419 |
acgactcaaaagaagaagggtcaaagtctagcacagaggatgaagatggtgtttgtaggaagttttcaagaagcattcaagaaaaaaaagaatggaaaga |
20479320 |
T |
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| Q |
202 |
agggtcaagaacgaaagcggaatcaatttgaattcggcattcgattgttgtcactgatagtttcatacctttattttcatcttttcaagaggaagaagga |
301 |
Q |
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| T |
20479319 |
agggtcaagaacgaaagcggaatcaatttgaattcggcattcgattgttgtcactgatagtttcatacctttattttcatcttttcaagaggaagaagga |
20479220 |
T |
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| Q |
302 |
ggttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaacatatgtcaggagg |
401 |
Q |
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| T |
20479219 |
ggttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaatatatgtcaggagg |
20479120 |
T |
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| Q |
402 |
aacaacggtgcttcaaaagcaagatatgaatattatttgaatattggaagtgtt |
455 |
Q |
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| T |
20479119 |
aacaacggtgcttcaaaagcaagatatgaatattttttcaatattggaagtgtt |
20479066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 396
Target Start/End: Original strand, 29727565 - 29727668
Alignment:
| Q |
293 |
gaagaaggaggttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaacatat |
392 |
Q |
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|||| ||||| |||||||| ||||||||| || |||| |||||||||| || ||||| |||||||||||||||||||||||| |||||||||||| |||| |
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| T |
29727565 |
gaagcaggagattagctttcaggagtttaagattaaggttttggaacctggcttagtagaccatattgttgtctccaacaaagaatttgccaaaatatat |
29727664 |
T |
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| Q |
393 |
gtca |
396 |
Q |
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|||| |
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| T |
29727665 |
gtca |
29727668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 367
Target Start/End: Complemental strand, 38515005 - 38514942
Alignment:
| Q |
304 |
ttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctc |
367 |
Q |
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| T |
38515005 |
ttagctttcaggagtttgtgaataagcttttggaaccaggattggtagatcatattgttgtctc |
38514942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 313 - 399
Target Start/End: Original strand, 24003047 - 24003133
Alignment:
| Q |
313 |
aggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaacatatgtcagga |
399 |
Q |
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| T |
24003047 |
aggagtttaaaaataagcttttggaaccaggattagtagaccatattgttgtctccaacaaatcagttgccaaaatatatgtgagga |
24003133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 298 - 396
Target Start/End: Original strand, 16837143 - 16837241
Alignment:
| Q |
298 |
aggaggttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaacatatgtca |
396 |
Q |
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| T |
16837143 |
aggagattagctttcaggagtttaagattaaggttttggaacctggcttagtagaccatattgttgtctctaacaaagaacttgccaaaatatatgtca |
16837241 |
T |
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