View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17648_low_9 (Length: 438)
Name: NF17648_low_9
Description: NF17648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17648_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Complemental strand, 15898850 - 15898437
Alignment:
| Q |
10 |
attatactttacctaataaaatggggtacacaatccaataagaagaagnnnnnnn-cccgtgacaatataaatctaaaatctccaattgaatcaaaatac |
108 |
Q |
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| T |
15898850 |
attatactttacctaataaaatggggtatacaatccaataagaagaagaaaaaaaacccgtgacagtataaatctaaaatctccaattgaatcaaaatac |
15898751 |
T |
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| Q |
109 |
acgtagtacaaaaataaatattttgatcatgaacttgagttgagtatcccactatttaaaaatgaaattttgtatatgattggtccttttcatcacatta |
208 |
Q |
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| T |
15898750 |
acgtagtacaaaaataaatattttgatcatgaacttgagttgagtatcccactatttaaaaatgaaattttgtatatgattggtccttttcatcacatta |
15898651 |
T |
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| Q |
209 |
gacgtcatgatccacaacttcataagaagctcacaattatcacatggatgtcttgttgataaggtatggccataaaaatgttgtgtaatgtggggtcaaa |
308 |
Q |
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| T |
15898650 |
gacgtcatgatccacaacttcataagaagctcacacttatcacatggatgtcttgttgataaggtatggccataaaaatgttgtgcaatgtggggtcaaa |
15898551 |
T |
|
| Q |
309 |
ataatacaatggtgacatttgtcacatacccaaccatgaaagttgttcatatagtactaaaccctaatcttataatttatcatgttgtttctatgttcca |
408 |
Q |
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| T |
15898550 |
ataatacaatggtgacatttgtcacatacccaaccatgaaagttgttcatatagtactaaaccctaatcttataatttatcatgttgtttctatgttcca |
15898451 |
T |
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| Q |
409 |
accatagtgcaaga |
422 |
Q |
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| T |
15898450 |
accatagtgcaaga |
15898437 |
T |
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