View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_high_2 (Length: 660)
Name: NF17649_high_2
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 144 - 646
Target Start/End: Complemental strand, 36996152 - 36995648
Alignment:
| Q |
144 |
gagtaagcctaacactatcaagagattgtggtgttgtcataaactatgtgtcatgatggtagagagcatcttgacatgtttgaagcaatgatgatcaagt |
243 |
Q |
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| T |
36996152 |
gagtaagcctaacactatcaagagattgtggtgttgtcataaactatgtgtcatgatggtagagagcatcttgacatgtttgatgcaatgatgatcaagt |
36996053 |
T |
|
| Q |
244 |
aacaagatttccatcgatcatgtacaattgtacatacttcccacaatgatatatatttttaattcttattctgtaagagtcttataagtaaaacaattga |
343 |
Q |
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| T |
36996052 |
aacaagatttccatcgatcatgtacaattgtacatacttcccacaatgatatatatttttaattcttattctgtaagagtcttataagtaaaacaattga |
36995953 |
T |
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| Q |
344 |
gaaaaatacatcatgcaattcaatttacatttaaagttgacgacatatattttaaaatgttgtcgtatacctaacgatgtatgtaacaatttccttt--n |
441 |
Q |
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| T |
36995952 |
gaaaaatacatcatgcaattcaatttacatttaaagttgacgacatatattttaaaatgttgtcgtatacctaacgatgtatgtaacaatttcctttaaa |
36995853 |
T |
|
| Q |
442 |
nnnnnnnntgtatgcaacaaattcaaacaagcagctttaactttatttcatcatatttatatgaaatcttgacagaacatacagatagatgattcactca |
541 |
Q |
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| T |
36995852 |
aaaaaaaatgtatgcaacaaattcaaacaagcagctttaactttatttcatcatatttatatgaaatcttgacagaacatacagatagatgattcactca |
36995753 |
T |
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| Q |
542 |
attttagctttggactgacttgtttcaagcaaaaggttccgcagcgtttttcttattcacgatgagttgatgatcacagctaaacttttccctcgagtgg |
641 |
Q |
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| T |
36995752 |
attttagctttggactgacttgtttcaagcaaaaggttccgcagcgtttttcttattcacgatgagttgatgatcacagctaaacttttccctcgagtgg |
36995653 |
T |
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| Q |
642 |
ttgtt |
646 |
Q |
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||||| |
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| T |
36995652 |
ttgtt |
36995648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 36996295 - 36996209
Alignment:
| Q |
1 |
tcctatgtcgggttgtttcattcatttatgtcacgattatgtaggtgttttatttaattgttggtgtgtctgtaacgatctttactt |
87 |
Q |
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| T |
36996295 |
tcctatgtcgggttgtttcattcatttatgtcacgattatgtaggtgttttatttaattgttggtgtgtctgtaacgatctttactt |
36996209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 36990346 - 36990280
Alignment:
| Q |
340 |
ttgagaaaaatacatcatgcaattcaatttacatttaaagttgacgacatatattttaaaatgttgt |
406 |
Q |
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| T |
36990346 |
ttgagaaaaataaatcatgcaattcaatttacatttaaagttgccgacatatattttatattgttgt |
36990280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 222 - 312
Target Start/End: Complemental strand, 36990520 - 36990434
Alignment:
| Q |
222 |
tttgaagcaatgatgatcaagtaacaagatttccatcgatcatgtacaattgtacatacttcccacaatgatatatatttttaattcttat |
312 |
Q |
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| T |
36990520 |
tttgaagtaatgatgttcaagtaacaagttttccatc----atgtacaattgtacatactccccacaatgatatagattttcaattcttat |
36990434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 36990572 - 36990518
Alignment:
| Q |
340 |
ttgagaaaaatacatcatgcaattcaatttacatttaaagttgacgacatatattt |
395 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36990572 |
ttgaaaaaaata-atcatgcaattcaatttacatttaaagttgccgacatatattt |
36990518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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