View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17649_high_24 (Length: 364)
Name: NF17649_high_24
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_high_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 344
Target Start/End: Original strand, 14008777 - 14009116
Alignment:
| Q |
7 |
tccaagaatatgggactgaagttgaaaaagccatagagcaattagggaaatcaaggtagtctcacttttaaatcagattttgatttcaccatctatgaat |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14008777 |
tccaagaacatgggactgaagttgaaaaagccatagagcaattaggaaaatcaaggtagtctcacttttaaatcagattttgatttcaccatctatgaat |
14008876 |
T |
|
| Q |
107 |
tattttgtgcatttctctacagaatatttatctatgttttcttgaactatgtttgctaatagtaaacttaatgaatggtttctctatagaatattttgaa |
206 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14008877 |
tattttgtgcatttctctatagaatatttatctatgttttcttgaactatgtttgctaatagtaaacttaatgaatggtttctctatagaatattttgaa |
14008976 |
T |
|
| Q |
207 |
ttttatttactgatagcaacttcagtgttatatgtt-aggttcaattatttagtatagttagttaggag-nnnnnnngtgaacaattagataacatgatt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
14008977 |
ttttatttactgatagcaacttcagtgttatatgttaaggttcaattatttagtatagttagttaggagaaaaaaaagtgaataattagataacatgatt |
14009076 |
T |
|
| Q |
305 |
actaacatattggtaaaccattcatgattttaacgctgaa |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14009077 |
actaacatattggtaaaccattcatgattttaacgctgaa |
14009116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 197 - 334
Target Start/End: Original strand, 40910504 - 40910644
Alignment:
| Q |
197 |
atattttgaattttatttactgatagcaacttcagtgttatatgtta-ggttcaatt-atttagtatagttagttaggag-nnnnnnngtgaacaattag |
293 |
Q |
| |
|
||||||||| || |||||||| |||||||| |||||||| ||||||| ||||||||| ||||||||| |||||||||||| ||||| ||| | |
|
|
| T |
40910504 |
atattttgagttctatttactaatagcaacctcagtgttgtatgttaaggttcaatttatttagtatggttagttaggagaaaaaaaaatgaaccattcg |
40910603 |
T |
|
| Q |
294 |
ataacatgattactaacatattggtaaaccattcatgattt |
334 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40910604 |
ataacatgattactaacatattgataaaccattcatgattt |
40910644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University