View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_high_25 (Length: 362)
Name: NF17649_high_25
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 52030639 - 52030978
Alignment:
| Q |
18 |
ggtggtgttgctttcttacataaacacatttttcatttacagaacccaaccattaatggttacaatgataacaattcaggttgcaacgcttcctattggt |
117 |
Q |
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| T |
52030639 |
ggtggtgttgctttcttacataaacacatttttcatttacagaacccaaccattaacggttacaatgataacaattcaggttgcaacgcttcctattggt |
52030738 |
T |
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| Q |
118 |
cgattcatggctaaggtgcttcctacaaaaaagtttcggatcattggttttggagagagagagttttcgttaaatccgggtccttttaacgtgaaagaac |
217 |
Q |
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| T |
52030739 |
cgattcatggctaaggtgcttcctacaaaaaagtttcggatcattggttttggagagagagagttttcgttaaatccgggtccttttaacgtgaaagagc |
52030838 |
T |
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| Q |
218 |
acgtgcttatttccatgtttgcaaatgctggtgctgcgtttgggagtggcactgcttatgctctcagtattgttgatatcattcgtgtattttattacag |
317 |
Q |
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| T |
52030839 |
acgtgcttatttccatgtttgcaaatgctggtgctgcgtttgggagtggcactgcttatgctctcagtattgttgatatcattcgtgtattttattacag |
52030938 |
T |
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| Q |
318 |
gaagattacctttcttaccagttggattcttcttctcact |
357 |
Q |
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| T |
52030939 |
gaagattacctttcttaccagttggattcttgttctcact |
52030978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 36900259 - 36900340
Alignment:
| Q |
180 |
gttttcgttaaatccgggtccttttaacgtgaaagaacacgtgcttatttccatgtttgcaaatgctggtgctgcgtttggg |
261 |
Q |
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| T |
36900259 |
gttttcgtttaacccaggtccgtttaacatgaaggaacatgttcttattaccatatttgcaaatgctggggctgcgtttggg |
36900340 |
T |
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