View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_high_44 (Length: 268)
Name: NF17649_high_44
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_high_44 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 30347511 - 30347756
Alignment:
| Q |
19 |
gtaaacagccattattagatgatttaatttaatgtaaattttctcaatataacttggtcatagtaatatttttgacaatttagtgcatagatatagctat |
118 |
Q |
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| T |
30347511 |
gtaaacaaccattattagatgatttaatttaatgtaaattttctcaatataacttggtcatagtaatatttttgacaatttagtgcatagatatagctat |
30347610 |
T |
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| Q |
119 |
gtatccaactgtttggggatttactcctcctatattttcaagtaaatgggaccaataaataaatatatgtgaattgtatttaacctcagaatcacaatat |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
30347611 |
gtatccaactgtttggtgatttactcctcctatattttcaagtaaatgggactaataaataaatatatgtgaattgtatttaaccacaaaatcacaatat |
30347710 |
T |
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| Q |
219 |
agc------atttgaaaatatctgtgaagctttatagtcccttcat |
258 |
Q |
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| T |
30347711 |
agcattagtatttgaaaatgcctgtgaagctttatagtgccttcat |
30347756 |
T |
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