View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17649_high_47 (Length: 267)
Name: NF17649_high_47
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_high_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 54013339 - 54013574
Alignment:
| Q |
18 |
atatacttcaattggtctctttaccagaccaaactttgaaagtaaaatctcaactatcaaatgagaaagctaatgatttgtatttc-aagacactcatga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
54013339 |
atatacttcaattggtctctttaccagaccaaattttgaaagtaaaatctcaactatcaaatgagaaagctaatgatttgtatttctaagacactcatga |
54013438 |
T |
|
| Q |
117 |
ttcatcttggctaaacaagggagagactaggaaacaattagacaaatattactgtaattatcaacatcagttttatgattttttctaatattccctcaat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54013439 |
ttcatcttggctaaacaagggagagactaggaaacaattagacaaatattactgtaattatcaacatcagttttatgatattttctaatattccctcaat |
54013538 |
T |
|
| Q |
217 |
ttacatggattaattttctccttttatcgtccaaac |
252 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
54013539 |
ttacatggattacttttctccttttatcatccaaac |
54013574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 47 - 252
Target Start/End: Original strand, 41807270 - 41807493
Alignment:
| Q |
47 |
caaactttgaaagtaaaatctcaactatcaaatgagaaagctaatgatttgtatttcaagacactcatgattcatcttggcta----------------- |
129 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41807270 |
caaattttgaaagtaa--tctcaactatcaaatgagaaaactaatgatttgtatttcaagacactcatgattcatcttggatacgaatgtaatattaaag |
41807367 |
T |
|
| Q |
130 |
----aacaagggagagactaggaaacaattagacaaatattactgtaattatcaacatcagttttatgattttttctaatattccctcaatttacatgga |
225 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
41807368 |
ggagaacaagggatagactaggaaacaattagataaatattactgtaattaccaacatcagttttatgatattttctaat-ttcccccaatttacatgga |
41807466 |
T |
|
| Q |
226 |
ttaattttctccttttatcgtccaaac |
252 |
Q |
| |
|
||| ||||| ||||||| | ||||||| |
|
|
| T |
41807467 |
ttatttttccccttttaacatccaaac |
41807493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University