View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17649_high_50 (Length: 254)

Name: NF17649_high_50
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17649_high_50
NF17649_high_50
[»] chr8 (9 HSPs)
chr8 (16-238)||(28992733-28992955)
chr8 (120-215)||(4331708-4331803)
chr8 (174-216)||(8902399-8902441)
chr8 (133-219)||(36492912-36492998)
chr8 (127-216)||(37165647-37165736)
chr8 (127-213)||(25193613-25193699)
chr8 (127-216)||(29721436-29721525)
chr8 (119-172)||(36157671-36157724)
chr8 (132-204)||(42649749-42649821)
[»] chr6 (9 HSPs)
chr6 (56-238)||(29055973-29056155)
chr6 (128-218)||(1104471-1104561)
chr6 (127-219)||(10362658-10362750)
chr6 (125-213)||(32186206-32186294)
chr6 (120-213)||(19350462-19350555)
chr6 (125-172)||(2923394-2923441)
chr6 (127-210)||(2987390-2987473)
chr6 (127-213)||(25350747-25350833)
chr6 (127-213)||(26514249-26514335)
[»] chr4 (11 HSPs)
chr4 (56-238)||(9777824-9778006)
chr4 (133-218)||(2365537-2365622)
chr4 (101-215)||(48805477-48805591)
chr4 (110-218)||(4551340-4551448)
chr4 (127-213)||(9690947-9691033)
chr4 (125-218)||(7099005-7099098)
chr4 (127-189)||(36183062-36183124)
chr4 (127-189)||(56337053-56337115)
chr4 (177-218)||(38445614-38445655)
chr4 (127-215)||(2072065-2072153)
chr4 (155-219)||(38296259-38296323)
[»] chr1 (9 HSPs)
chr1 (101-215)||(21405336-21405450)
chr1 (101-238)||(3074244-3074381)
chr1 (101-215)||(22191309-22191423)
chr1 (133-218)||(25252184-25252269)
chr1 (127-213)||(52691996-52692082)
chr1 (131-216)||(38070361-38070446)
chr1 (174-216)||(33142739-33142781)
chr1 (133-218)||(13867357-13867442)
chr1 (128-213)||(28358416-28358501)
[»] chr7 (16 HSPs)
chr7 (101-215)||(17056028-17056142)
chr7 (56-215)||(22819244-22819403)
chr7 (110-218)||(2820246-2820354)
chr7 (110-218)||(20918468-20918576)
chr7 (140-213)||(2678889-2678961)
chr7 (101-213)||(25018847-25018959)
chr7 (98-172)||(23887580-23887654)
chr7 (98-172)||(23898756-23898830)
chr7 (132-213)||(19544931-19545012)
chr7 (177-218)||(23811563-23811604)
chr7 (177-218)||(4344393-4344434)
chr7 (125-186)||(17504115-17504176)
chr7 (125-186)||(17549038-17549099)
chr7 (156-213)||(20349517-20349574)
chr7 (120-213)||(27218651-27218744)
chr7 (177-213)||(29916671-29916707)
[»] chr3 (11 HSPs)
chr3 (101-215)||(44888403-44888517)
chr3 (101-210)||(31547870-31547980)
chr3 (133-219)||(52250647-52250733)
chr3 (155-219)||(6825375-6825439)
chr3 (120-218)||(46190010-46190108)
chr3 (133-219)||(48930257-48930343)
chr3 (125-218)||(5342736-5342829)
chr3 (125-218)||(25024368-25024461)
chr3 (125-216)||(8130474-8130565)
chr3 (127-164)||(17271260-17271297)
chr3 (120-213)||(19875761-19875854)
[»] chr2 (6 HSPs)
chr2 (120-204)||(28598462-28598545)
chr2 (101-219)||(43310758-43310876)
chr2 (133-219)||(26146746-26146832)
chr2 (127-169)||(33583924-33583966)
chr2 (97-174)||(7301168-7301245)
chr2 (123-164)||(25380965-25381006)
[»] chr5 (8 HSPs)
chr5 (120-211)||(26261851-26261942)
chr5 (133-218)||(19838148-19838233)
chr5 (127-218)||(26262400-26262490)
chr5 (120-211)||(26262962-26263053)
chr5 (133-213)||(41590627-41590707)
chr5 (135-218)||(380434-380517)
chr5 (156-219)||(4297832-4297895)
chr5 (127-189)||(12825724-12825786)
[»] scaffold0061 (1 HSPs)
scaffold0061 (133-219)||(55193-55279)
[»] scaffold0017 (1 HSPs)
scaffold0017 (133-219)||(143355-143441)
[»] scaffold0113 (1 HSPs)
scaffold0113 (179-218)||(36081-36120)
[»] scaffold0016 (1 HSPs)
scaffold0016 (166-219)||(28338-28391)
[»] scaffold0024 (1 HSPs)
scaffold0024 (147-215)||(86728-86796)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 28992955 - 28992733
Alignment:
Q  16 tcactgatccacccaaaacaacgtatttgccccgttactgaccttgcgcacaacattctccttaaactaaccatcacctgtctctcctaacccgtcacga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28992955 tcactgatccacccaaaacaacgtatttgccccgttactgaccttgcgcacaacattctccttaaactaaccatcacctgtctctcctaacccgtcacga 28992856  T
Q  116 atactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccaca 215  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28992855 atactcgccacctccctccaccacgaagaaacactctggcccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccaca 28992756  T
Q  216 aactgtttttatcgactagtaac 238  Q
    |||||||||||||||||||||||    
T  28992755 aactgtttttatcgactagtaac 28992733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 4331708 - 4331803
Alignment:
Q  120 tcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccaca 215  Q
    |||| |||||||||||||  |||||||||||| |  ||||||||| ||||||| ||| |||||  ||||||||||||  |||||||||||| ||||    
T  4331708 tcgctacctccctccaccgagaagaaacactccggtccccaacctccaacctcccattctccttgccataacgagctttcaacaccctatatcaca 4331803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 8902399 - 8902441
Alignment:
Q  174 catcctcctcaccataacgagctaccaacaccctataccacaa 216  Q
    |||||||||||||||||||||| || |||||||||||||||||    
T  8902399 catcctcctcaccataacgagccactaacaccctataccacaa 8902441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 36492912 - 36492998
Alignment:
Q  133 ccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaact 219  Q
    |||||| |||||| | ||| | |||||||||  ||||||| |||||||||||||||| |  || ||||||||||||||||| |||||    
T  36492912 ccaccaagaagaacctctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctataccataaact 36492998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 37165736 - 37165647
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaa 216  Q
    |||||||||||| | |||||||||| | |||||||||| ||||| | |||||||||| ||||| |  || ||||  ||||||||||||||    
T  37165736 ctccctccaccaagtagaaacactccggcccccaacctccaaccgcccatcctcctcgccatatctcgccaccagtaccctataccacaa 37165647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 25193613 - 25193699
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatacca 213  Q
    ||||||||||||  ||||| ||||| | ||||| |||| ||||||| || ||||||||||||| ||  | |||||||||| ||||||    
T  25193613 ctccctccaccaataagaatcactccggccccctacctccaacctcccagcctcctcaccataccgcaccaccaacacccgatacca 25193699  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 29721525 - 29721436
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaa 216  Q
    ||||||||||||  |||| |||||| | ||||| |||| ||||||| ||  |||||||||||| |  || ||||| ||||||||||||||    
T  29721525 ctccctccaccaataagagacactccggccccctacctccaacctcccaggctcctcaccatatctcgccaccaaaaccctataccacaa 29721436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 36157671 - 36157724
Alignment:
Q  119 ctcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctc 172  Q
    |||||||||||||||||||| ||||||  |||| | |||||||||| |||||||    
T  36157671 ctcgccacctccctccaccaagaagaacaactccggcccccaacctccaacctc 36157724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 42649749 - 42649821
Alignment:
Q  132 tccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacac 204  Q
    ||||||||| |||| ||||| | |||||| | ||||||||| | |||||||||||||| | ||| ||||||||    
T  42649749 tccaccacgtagaaccactccggcccccatctttcaacctcccgtcctcctcaccatatctagccaccaacac 42649821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 238
Target Start/End: Original strand, 29055973 - 29056155
Alignment:
Q  56 accttgcgcacaacattctccttaaactaaccatcacctgtctctcctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgac 155  Q
    ||||| ||| ||||||| ||| ||||| | || ||||||   || |||||||||||| ||||||||||||||||| |||||||||||||||||||| | |    
T  29055973 accttacgctcaacattgtccctaaaccacccttcacctacttcacctaacccgtcatgaatactcgccacctccttccaccacgaagaaacactccggc 29056072  T
Q  156 ccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaactgtttttatcgactagtaac 238  Q
    ||||||||  ||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||||||| ||||    
T  29056073 ccccaaccgccaacctcccatcctcctcaccataacgtgctaccaacaccctataccacatactatctttatcgactaataac 29056155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 1104561 - 1104471
Alignment:
Q  128 tccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    ||||||||| || |||||  |||| | |||||||||  ||||||| |  ||||||||||||||||||| |||| |||||||||||||||||    
T  1104561 tccctccacaacaaagaactactcaggcccccaaccaccaacctcactgcctcctcaccataacgagcaaccatcaccctataccacaaac 1104471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 10362658 - 10362750
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaact 219  Q
    ||||| |||||| |||||| ||||| | ||||| |||| ||||||| |||||||||||||||| |  || ||||| ||||||||||| |||||    
T  10362658 ctcccgccaccaagaagaaccactccggccccccacctccaacctcccatcctcctcaccatatctcgccaccaaaaccctataccataaact 10362750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 32186206 - 32186294
Alignment:
Q  125 acctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatacca 213  Q
    |||||||||||||| |||||| ||||| | |||||||||| ||||||| || || |||||| ||| |  || |||||||||||||||||    
T  32186206 acctccctccaccaagaagaagcactccggcccccaacctccaacctcccagccacctcactatatctcgccaccaacaccctatacca 32186294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 19350462 - 19350555
Alignment:
Q  120 tcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatacca 213  Q
    |||| |||||| ||||||| || || |||||| | |||||||||| ||||||| |  ||||||||||||| |  || |||||||||||||||||    
T  19350462 tcgctacctccttccaccaagatgatacactccggcccccaacctccaacctccctgcctcctcaccatatctcgccaccaacaccctatacca 19350555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 2923394 - 2923441
Alignment:
Q  125 acctccctccaccacgaagaaacactctgacccccaaccttcaacctc 172  Q
    |||||||||||||| |||||||||||| | |||||||||| |||||||    
T  2923394 acctccctccaccaagaagaaacactccgtcccccaacctccaacctc 2923441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 2987473 - 2987390
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctata 210  Q
    ||||||||||||||||||| |||    |||||||  || ||||| ||| ||| ||||||||||||||||||| |||| ||||||    
T  2987473 ctccctccaccacgaagaaccacatcaacccccattctccaaccgctcttccccctcaccataacgagctactaacatcctata 2987390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 25350747 - 25350833
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatacca 213  Q
    ||||||| ||||  ||||| ||||| | ||||| |||  ||||||| || ||||||||||||| || || |||||||||||||||||    
T  25350747 ctccctcaaccaaaaagaatcactccggccccctaccaccaacctcccagcctcctcaccataccgcgccaccaacaccctatacca 25350833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 26514249 - 26514335
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatacca 213  Q
    ||||||||||||   |||| ||||| | |||||||||| ||| ||| |  ||||||||||||| ||||| |||||||| ||||||||    
T  26514249 ctccctccaccaaatagaaccactccggcccccaacctccaaactccctgcctcctcaccataccgagccaccaacactctatacca 26514335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 238
Target Start/End: Original strand, 9777824 - 9778006
Alignment:
Q  56 accttgcgcacaacattctccttaaactaaccatcacctgtctctcctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgac 155  Q
    ||||| ||| ||||||| ||| ||||||| || ||||||   || |||||| ||||||||||||||||||||||| |||||||| ||||||||||| | |    
T  9777824 accttacgctcaacattttccctaaactacccttcacctacttcacctaactcgtcacgaatactcgccacctccttccaccacaaagaaacactccggc 9777923  T
Q  156 ccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaactgtttttatcgactagtaac 238  Q
    |||||||| |||||||| |||||||||||| |||||| |||||||||||||||||||| | |||   |||||| |||||||||    
T  9777924 ccccaaccgtcaacctcccatcctcctcactataacgcgctaccaacaccctataccatatactacctttatcaactagtaac 9778006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 2365537 - 2365622
Alignment:
Q  133 ccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    |||||| |||||| ||||| |||||||| ||||||||||| |  ||||||||||||||||||| ||||||||||||||||| ||||    
T  2365537 ccaccatgaagaaccactccgacccccatccttcaacctccctacctcctcaccataacgagcaaccaacaccctataccataaac 2365622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 48805477 - 48805591
Alignment:
Q  101 cctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctacca 200  Q
    |||||||| || ||||||||||| |||||| |||||||| ||||| ||||| | | ||||| || ||||||| ||||| ||||||| ||||||| |  ||    
T  48805477 cctaacccatctcgaatactcgctacctccttccaccacaaagaaccactccggcacccaatctccaacctcccatccacctcaccgtaacgagttgtca 48805576  T
Q  201 acaccctataccaca 215  Q
    |||||||||||||||    
T  48805577 acaccctataccaca 48805591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 4551448 - 4551340
Alignment:
Q  110 tcacgaatactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctat 209  Q
    |||||||| ||| ||||||||||| |||||| |||  |||||    ||||| |||  ||||||||||||||| ||||||||||||| |||||||||||||    
T  4551448 tcacgaattctcaccacctccctcaaccacgtagacccactccagtccccatcctctaacctctcatcctccacaccataacgagcaaccaacaccctat 4551349  T
Q  210 accacaaac 218  Q
    |||| ||||    
T  4551348 accaaaaac 4551340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 9690947 - 9691033
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatacca 213  Q
    ||||||||||||   |||||||||| | |||||||||| ||||||| || ||||||||||||| | |||||| | ||||||||||||    
T  9690947 ctccctccaccaatgagaaacactccggcccccaacctccaacctcccagcctcctcaccatatctagctactagcaccctatacca 9691033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 7099005 - 7099098
Alignment:
Q  125 acctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    |||||| |||||||   |||| ||||| | |||||| ||| |||||||||||||||||||||||| | ||||| ||| |||| |||||||||||    
T  7099005 acctccttccaccaaatagaaccactccggcccccatcctccaacctctcatcctcctcaccatatctagctatcaaaacccgataccacaaac 7099098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 36183062 - 36183124
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccata 189  Q
    |||||||||||| | |||||||||| | |||||||||| ||||| | ||||||||||||||||    
T  36183062 ctccctccaccaagtagaaacactccggcccccaacctccaaccgcccatcctcctcaccata 36183124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 56337115 - 56337053
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccata 189  Q
    |||||||||||| | |||||||||| |||||||||||| ||||| | || |||||||||||||    
T  56337115 ctccctccaccaagtagaaacactccgacccccaacctccaaccgcccagcctcctcaccata 56337053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 38445614 - 38445655
Alignment:
Q  177 cctcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||    
T  38445614 cctcctcaccataacgaactaccaacaccctgtacaacaaac 38445655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 2072065 - 2072153
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccaca 215  Q
    ||||||||||||  ||||||||||| | ||||||||||  ||||||    ||||||||||||| |  || |||| ||||||||||||||    
T  2072065 ctccctccaccagcaagaaacactccgtcccccaacctctaacctccttgcctcctcaccatatctcgccaccagcaccctataccaca 2072153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 38296259 - 38296323
Alignment:
Q  155 cccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaact 219  Q
    |||||||||| ||||||| ||| | |||||||||| |  || ||||||||||||||||| |||||    
T  38296259 cccccaacctccaacctcccattcacctcaccatatctcgccaccaacaccctataccaaaaact 38296323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 21405336 - 21405450
Alignment:
Q  101 cctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctacca 200  Q
    |||||||| || |||||||||||||||||| |||||||||||||||||||||| |||||||||  ||||||| ||||||||||||||||||| |||||||    
T  21405336 cctaacccatctcgaatactcgccacctccttccaccacgaagaaacactctggcccccaaccaccaacctcccatcctcctcaccataacgtgctacca 21405435  T
Q  201 acaccctataccaca 215  Q
    |||||||||||||||    
T  21405436 acaccctataccaca 21405450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 3074244 - 3074381
Alignment:
Q  101 cctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctacca 200  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||| |  ||||||||  ||||||| ||||||||||||||||||| |||||||    
T  3074244 cctaacccgtcccgaatactcgccacctccttccaccacgaagaaacactccggtccccaaccgccaacctcccatcctcctcaccataacgcgctacca 3074343  T
Q  201 acaccctataccacaaactgtttttatcgactagtaac 238  Q
    ||||||||||||||| |||   ||||||| ||||||||    
T  3074344 acaccctataccacatactacctttatcgtctagtaac 3074381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 22191423 - 22191309
Alignment:
Q  101 cctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctacca 200  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||  ||||||| ||||||||||||||||||  || ||||    
T  22191423 cctaacccatcacgaatactcgccacctccttccaccacgaagaaacactccggcccccaaccaccaacctcccatcctcctcaccataacacgccacca 22191324  T
Q  201 acaccctataccaca 215  Q
    |||||||||||||||    
T  22191323 acaccctataccaca 22191309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 25252269 - 25252184
Alignment:
Q  133 ccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    ||||||| ||||| ||||||| |||||||||   |||||| |  |||| ||| |||||||||||||||||||||||||||||||||    
T  25252269 ccaccacaaagaaccactctgccccccaaccactaacctccctgcctcttcatcataacgagctaccaacaccctataccacaaac 25252184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 52691996 - 52692082
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatacca 213  Q
    |||||||||||| |||||| ||||| ||||| | |||  ||||||| || ||||||||||||| || || |||||||||||||||||    
T  52691996 ctccctccaccaagaagaatcactccgaccctctaccaccaacctcccagcctcctcaccataccgcgccaccaacaccctatacca 52692082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 38070361 - 38070446
Alignment:
Q  131 ctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaa 216  Q
    |||||||| | |||||||||| |||||||||||| ||||| | || ||||||||||||| |  || ||||| || |||||||||||    
T  38070361 ctccaccaagtagaaacactccgacccccaacctccaaccgcccagcctcctcaccataccttgccaccaaaactctataccacaa 38070446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 33142781 - 33142739
Alignment:
Q  174 catcctcctcaccataacgagctaccaacaccctataccacaa 216  Q
    ||||||||||||| ||||| || ||||||||||||||||||||    
T  33142781 catcctcctcaccgtaacgggccaccaacaccctataccacaa 33142739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 13867442 - 13867357
Alignment:
Q  133 ccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    ||||||||| |||||||||   |||||||||| ||||| | || ||  ||||||||| ||||||||||  ||||||||||| ||||    
T  13867442 ccaccacgatgaaacactcctgcccccaacctccaaccgcccagccgtctcaccataccgagctaccaggaccctataccataaac 13867357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 28358416 - 28358501
Alignment:
Q  128 tccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatacca 213  Q
    ||||||||||| || || |||||| | |||||||||| ||||||| |  ||||||||||||| |  || ||||||||||| |||||    
T  28358416 tccctccaccaagatgagacactccggcccccaacctccaacctccctgcctcctcaccatatctcgccaccaacaccctgtacca 28358501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 17056028 - 17056142
Alignment:
Q  101 cctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctacca 200  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||  ||||||| ||||||||||||||||||| || ||||    
T  17056028 cctaacccatcacgaatactcgccacctccttccaccacgaagaaacactccggcccccaaccaccaacctcccatcctcctcaccataacgcgccacca 17056127  T
Q  201 acaccctataccaca 215  Q
    |||||||||||||||    
T  17056128 acaccctataccaca 17056142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 215
Target Start/End: Complemental strand, 22819403 - 22819244
Alignment:
Q  56 accttgcgcacaacattctccttaaactaaccatcacctgtctctcctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgac 155  Q
    ||||| ||| ||||||| ||| ||||| | || ||||||   || |||||||| ||||||||||  || |||||| |||||||| ||||||||||| | |    
T  22819403 accttacgctcaacattgtccctaaaccacccttcacctacttcacctaacccatcacgaatacctgctacctccttccaccacaaagaaacactccggc 22819304  T
Q  156 ccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccaca 215  Q
    ||||||||  |||||||   ||||||||||||||||| ||||||||||||||||||||||    
T  22819303 ccccaaccgccaacctcctgtcctcctcaccataacgcgctaccaacaccctataccaca 22819244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 2820354 - 2820246
Alignment:
Q  110 tcacgaatactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctat 209  Q
    ||||||||  |||| |||||||||||||| ||||||||||| || ||| |||||| ||||||||||| | |||||||||||| || | ||||||||||||    
T  2820354 tcacgaattttcgctacctccctccaccaagaagaaacactttgtcccacaacctccaacctctcattcacctcaccataacaagattccaacaccctat 2820255  T
Q  210 accacaaac 218  Q
    |||||||||    
T  2820254 accacaaac 2820246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 218
Target Start/End: Original strand, 20918468 - 20918576
Alignment:
Q  110 tcacgaatactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctat 209  Q
    ||||||||  |||| ||||||||||||||| ||||| ||||| ||||||||||   ||||||| |  ||| |||||||||||||| ||| | ||||||||    
T  20918468 tcacgaattttcgcaacctccctccaccacaaagaaccactccgacccccaactggcaacctccctgccttctcaccataacgagttactagcaccctat 20918567  T
Q  210 accacaaac 218  Q
    |||||||||    
T  20918568 accacaaac 20918576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 2678961 - 2678889
Alignment:
Q  140 gaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatacca 213  Q
    |||||||||||| | |||||||||| |||| |||||| ||||| | |||||||||||||||||||| |||||||    
T  2678961 gaagaaacactccggcccccaacct-caacttctcattctccttagcataacgagctaccaacaccatatacca 2678889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 25018959 - 25018847
Alignment:
Q  101 cctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctacca 200  Q
    ||||||||||| | |||| | || | ||| | |||||| |||||| ||||  |||||||||||| ||||||| || ||||||||||||| |  || ||||    
T  25018959 cctaacccgtccctaatattagcgatctctcgccaccaagaagaaccacttcgacccccaacctccaacctcccagcctcctcaccatatcttgccacca 25018860  T
Q  201 acaccctatacca 213  Q
    |||||||||||||    
T  25018859 acaccctatacca 25018847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 23887580 - 23887654
Alignment:
Q  98 tctcctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctc 172  Q
    ||||||||||| || | |||  |||| | |||||||||||| |||||||||||| |||||||||||| |||||||    
T  23887580 tctcctaacccatccctaatcttcgctatctccctccaccaagaagaaacactccgacccccaacctccaacctc 23887654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 23898756 - 23898830
Alignment:
Q  98 tctcctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctc 172  Q
    ||||||||||| || | |||  |||| | |||||||||||| |||||||||||| |||||||||||| |||||||    
T  23898756 tctcctaacccatccctaatcttcgctatctccctccaccaagaagaaacactccgacccccaacctccaacctc 23898830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 19545012 - 19544931
Alignment:
Q  132 tccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatacca 213  Q
    |||||||| ||||| ||||| | |||||||||| |||||||||  ||||||||||||| || |   ||||||||||||||||    
T  19545012 tccaccacaaagaaccactccggcccccaacctccaacctctctgcctcctcaccatatcgtgtcgccaacaccctatacca 19544931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 23811563 - 23811604
Alignment:
Q  177 cctcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    |||||||||| |||||||||||||||| ||||||||||||||    
T  23811563 cctcctcaccgtaacgagctaccaacaacctataccacaaac 23811604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 4344393 - 4344434
Alignment:
Q  177 cctcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    ||||||||||||||||||| || |||||||||||||| ||||    
T  4344393 cctcctcaccataacgagccactaacaccctataccataaac 4344434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 17504176 - 17504115
Alignment:
Q  125 acctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcacc 186  Q
    |||||| |||||||| ||||| ||||| | |||||| ||| ||||||| |||||||||||||    
T  17504176 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcacc 17504115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 17549038 - 17549099
Alignment:
Q  125 acctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcacc 186  Q
    |||||| |||||||| ||||| ||||| | |||||| ||| ||||||| |||||||||||||    
T  17549038 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcacc 17549099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 20349517 - 20349574
Alignment:
Q  156 ccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatacca 213  Q
    |||| |||| ||||||| |  ||||||||||||| ||||| |||||||||||||||||    
T  20349517 cccctacctccaacctccctgcctcctcaccataccgagccaccaacaccctatacca 20349574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 213
Target Start/End: Complemental strand, 27218744 - 27218651
Alignment:
Q  120 tcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatacca 213  Q
    |||| |||||| ||||||| || || |||||| | |||||||||  ||||||| |  ||||||||||||| |  || |||||||||||||||||    
T  27218744 tcgctacctccttccaccaagatgatacactccggcccccaaccgccaacctccctgcctcctcaccatatctcgccaccaacaccctatacca 27218651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 29916671 - 29916707
Alignment:
Q  177 cctcctcaccataacgagctaccaacaccctatacca 213  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  29916671 cctcctcaccataacgagctaccaataccctgtacca 29916707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 44888403 - 44888517
Alignment:
Q  101 cctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctacca 200  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| |||||  ||||||| ||||||||||||||||||| || ||||    
T  44888403 cctaacccatcacgaatactcgccacctccttccaccacgaagaaacactccgaccctcaaccaccaacctcccatcctcctcaccataacgcgccacca 44888502  T
Q  201 acaccctataccaca 215  Q
    |||||||||||||||    
T  44888503 acaccctataccaca 44888517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 31547870 - 31547980
Alignment:
Q  101 cctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgaccccc-aaccttcaacctctcatcctcctcaccataacgagctacc 199  Q
    |||||||| || ||||||| |||||||||| |||||||||||||||||||| | ||||| ||||  ||||||| ||||||||||||||||||| ||||||    
T  31547870 cctaacccatctcgaatacccgccacctccttccaccacgaagaaacactccggccccccaaccaccaacctcccatcctcctcaccataacgcgctacc 31547969  T
Q  200 aacaccctata 210  Q
    |||||||||||    
T  31547970 aacaccctata 31547980  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 52250733 - 52250647
Alignment:
Q  133 ccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaact 219  Q
    |||||| |||||| ||||| | |||||||||| ||||||| |||||||||||||||| |  || ||||||||||||||||| |||||    
T  52250733 ccaccaagaagaaccactccggcccccaacctccaacctcccatcctcctcaccatatctcgccaccaacaccctataccataaact 52250647  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 6825375 - 6825439
Alignment:
Q  155 cccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaact 219  Q
    |||||||||  ||||||| |||||||||||||||| || || ||||||||||||||||| |||||    
T  6825375 cccccaaccgccaacctcccatcctcctcaccataccgcgccaccaacaccctataccataaact 6825439  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 46190010 - 46190108
Alignment:
Q  120 tcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    |||| ||||||||||| ||   |||||||||| | |||||||||| ||||| |||| ||||||||||||| |  || ||||| ||||| ||||||||||    
T  46190010 tcgctacctccctccatcaattagaaacactccggcccccaacctccaaccgctcagcctcctcaccatacctcgccaccaataccctgtaccacaaac 46190108  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 48930257 - 48930343
Alignment:
Q  133 ccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaact 219  Q
    |||||||| |||| |||||   |||||||||| ||||||| |||||||||||||||| |  || ||||| ||||||||||| |||||    
T  48930257 ccaccacgcagaaccactccagcccccaacctccaacctcccatcctcctcaccatatctcgccaccaaaaccctataccataaact 48930343  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 5342829 - 5342736
Alignment:
Q  125 acctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    ||||||||||||||||||||| ||||| | |||| | ||| |||||||||  |||||| | |||||||||| || || || |||||||| ||||    
T  5342829 acctccctccaccacgaagaaccactccggcccctatcctccaacctctctacctccttaacataacgagccacaaatacgctataccataaac 5342736  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 25024461 - 25024368
Alignment:
Q  125 acctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    ||||| ||||||||  |||||  |||| |||||||||||  ||||||| |  ||||||||||||| | |||| |||||||||||||||| ||||    
T  25024461 acctctctccaccaataagaacaactccgacccccaaccgccaacctccctgcctcctcaccatatctagcttccaacaccctataccaaaaac 25024368  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 8130474 - 8130565
Alignment:
Q  125 acctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaa 216  Q
    |||||| |||||||  ||||| ||||| | |||||||||| ||||||| ||||   | ||||||| | ||| ||||||||||||||||||||    
T  8130474 acctccttccaccaaaaagaaccactccggcccccaacctccaacctcccatcacgcacaccatacctagcaaccaacaccctataccacaa 8130565  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 17271297 - 17271260
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaacct 164  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  17271297 ctccctccaccaagaagaaacactcttacccccaacct 17271260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 19875761 - 19875854
Alignment:
Q  120 tcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatacca 213  Q
    |||| |||||| ||||||| || || |||||| | |||||||||| |||||||    ||||||||||||| |  || |||||||||||||||||    
T  19875761 tcgctacctccttccaccaagatgatacactccggcccccaacctccaacctccttgcctcctcaccatatctcgccaccaacaccctatacca 19875854  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 28598462 - 28598545
Alignment:
Q  120 tcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacac 204  Q
    |||| |||||| |||||||||||||||||||| | |||||| | | ||||||||||| |||||||| ||||||||||||||||||    
T  28598462 tcgctacctccttccaccacgaagaaacactccgtccccca-catccaacctctcattctcctcactataacgagctaccaacac 28598545  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 43310758 - 43310876
Alignment:
Q  101 cctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctacca 200  Q
    ||||||||||| | |||| | || | ||| | |||||| |||||| ||||| | |||||||||| ||||||| |||||||||| ||||| |  || ||||    
T  43310758 cctaacccgtccctaatattagcgatctctcgccaccaagaagaaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccacca 43310857  T
Q  201 acaccctataccacaaact 219  Q
    |||||||||||||||||||    
T  43310858 acaccctataccacaaact 43310876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 26146746 - 26146832
Alignment:
Q  133 ccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaact 219  Q
    |||||| ||| || ||||| | |||||||||| ||||||| |||||||||| ||||| |  || |||||||||||||||||||||||    
T  26146746 ccaccaagaataaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctataccacaaact 26146832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 33583966 - 33583924
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaac 169  Q
    |||||||||||| |||||||||||| |||||||||||| ||||    
T  33583966 ctccctccaccaagaagaaacactccgacccccaacctccaac 33583924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 7301168 - 7301245
Alignment:
Q  97 ctctcctaacccgtcacgaatactcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctc 174  Q
    |||||||| |||||| | |||  |||| | |||||||||||| ||||| ||||| || |||||||||| |||||||||    
T  7301168 ctctcctaccccgtccctaatcttcgctatctccctccaccaagaagagacactatgtcccccaacctccaacctctc 7301245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 25381006 - 25380965
Alignment:
Q  123 ccacctccctccaccacgaagaaacactctgacccccaacct 164  Q
    |||||||||||||||||||||||  |||||| ||||||||||    
T  25381006 ccacctccctccaccacgaagaacaactctggcccccaacct 25380965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 26261942 - 26261851
Alignment:
Q  120 tcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatac 211  Q
    |||| ||||||||||||||||||||  ||||||| ||||||||  |||||||| ||||||| ||||| || ||||| || | ||||||||||    
T  26261942 tcgctacctccctccaccacgaagacccactctggcccccaacaatcaacctcacatcctcatcaccgtagcgagcaactagcaccctatac 26261851  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 19838148 - 19838233
Alignment:
Q  133 ccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    ||||||| ||||| ||||||| |||| |||| |||||||| |  | |||||| |||||||||||| ||||||| ||||||||||||    
T  19838148 ccaccacaaagaaccactctgtcccctaaccatcaacctccctgcatcctcatcataacgagctaacaacaccttataccacaaac 19838233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 26262490 - 26262400
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    |||||||||||| |||||  ||||||| |||| ||||  ||||||| ||||||||||||||||| |||| |  |||||||||||||| ||||    
T  26262490 ctccctccaccatgaagacccactctggcccc-aaccaccaacctcccatcctcctcaccataatgagcaagtaacaccctataccaaaaac 26262400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 26263053 - 26262962
Alignment:
Q  120 tcgccacctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatac 211  Q
    |||| ||||||||||||||  ||||  ||||| | |||||| ||  ||||||  |||||||||||||||||||||| || ||||||||||||    
T  26263053 tcgctacctccctccaccaaaaagacccactccggcccccacccaccaaccttccatcctcctcaccataacgagcaactaacaccctatac 26262962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 41590627 - 41590707
Alignment:
Q  133 ccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctatacca 213  Q
    |||||| |||||| | ||| | |||||||||  ||||||| |||||||||||||||| |  || |||||||||||||||||    
T  41590627 ccaccaagaagaacctctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctatacca 41590707  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 380434 - 380517
Alignment:
Q  135 accacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    |||| |||||| ||||| | |||||||||| ||||||| |  ||||||||||||| || ||| ||| |||||||||||| ||||    
T  380434 accaagaagaaccactccggcccccaacctccaacctccctgcctcctcaccataccgcgcttccagcaccctataccagaaac 380517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 4297895 - 4297832
Alignment:
Q  156 ccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaact 219  Q
    ||||||||  ||||||| |||||||||||||||| |  || ||||||||||||||||| |||||    
T  4297895 ccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctataccataaact 4297832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 12825724 - 12825786
Alignment:
Q  127 ctccctccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccata 189  Q
    |||||||||||||||||||  ||||||||||||| ||| ||| ||  |||||||| |||||||    
T  12825724 ctccctccaccacgaagaacaactctgacccccatcctccaaactgccatcctccacaccata 12825786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 55193 - 55279
Alignment:
Q  133 ccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaact 219  Q
    |||||| ||| || ||||| | |||||||||| |||||||||||||||||| ||||| |  || ||||||||||||||||| |||||    
T  55193 ccaccaagaaaaatcactccggcccccaacctccaacctctcatcctcctcgccatatctcgccaccaacaccctataccataaact 55279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 143441 - 143355
Alignment:
Q  133 ccaccacgaagaaacactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccacaaact 219  Q
    |||||| ||| || ||||| | |||||||||| |||||||||||||||||| ||||| |  || ||||||||||||||||| |||||    
T  143441 ccaccaagaaaaatcactccggcccccaacctccaacctctcatcctcctcgccatatctcgccaccaacaccctataccataaact 143355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 36081 - 36120
Alignment:
Q  179 tcctcaccataacgagctaccaacaccctataccacaaac 218  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  36081 tcctcaccataacgagccaccaacactctataccacaaac 36120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 28338 - 28391
Alignment:
Q  166 caacctctcatcctcctcaccataacgagctaccaacaccctataccacaaact 219  Q
    ||||||| |||||||||| ||||| |  || |||||||||||||||||||||||    
T  28338 caacctcccatcctcctcgccatatcttgccaccaacaccctataccacaaact 28391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 86796 - 86728
Alignment:
Q  147 cactctgacccccaaccttcaacctctcatcctcctcaccataacgagctaccaacaccctataccaca 215  Q
    |||||||||||||| ||| ||||||| ||  |||||||||||| | ||| |||||||| | ||||||||    
T  86796 cactctgacccccatcctccaacctcccacactcctcaccatatctagcaaccaacactcgataccaca 86728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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