View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_high_56 (Length: 242)
Name: NF17649_high_56
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 43621587 - 43621670
Alignment:
| Q |
143 |
attatttttattttaatctcaaatatatttatggtatgaaatgtgaataacaggactattgaggaagcaattaagagtgctaat |
226 |
Q |
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| T |
43621587 |
attatttttattttaatctcaaatatatttatggtatgaaatgtgaataacaggactattgaggaagcaattaagagtgctaat |
43621670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 43621445 - 43621504
Alignment:
| Q |
1 |
gattaaaatgtaaagctatttccagtagcttcaaaaaatgattttaatgagtgaaccatt |
60 |
Q |
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| T |
43621445 |
gattaaaatgtaaagctatttccagtagcttcaaaaaatgattttaatgagtgaaccatt |
43621504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 43628079 - 43628118
Alignment:
| Q |
183 |
atgtgaataacaggactattgaggaagcaattaagagtgc |
222 |
Q |
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| T |
43628079 |
atgtgaataacaggactattgaggaagccattaagagtgc |
43628118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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