View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17649_high_6 (Length: 541)
Name: NF17649_high_6
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 529
Target Start/End: Original strand, 29900348 - 29900861
Alignment:
| Q |
18 |
ttatgtggttgtccaaatagaaaatgcatcaattcaaaaggcataaaaggactgcagagagctgatgcatcaactcggggttgccactgttactcatatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29900348 |
ttatgtggttgtccaaatagaaaatgcatcaattcaaaaggcataaaaagactgcagagagctgatgcatcaactcggggatgccactgttactcatatc |
29900447 |
T |
|
| Q |
118 |
agaaggaaactgaactctgatgtcacaacgttgtggactagagttgtcgtttctacnnnnnnnnntatattcaagaactctctctatccaagtgcacttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29900448 |
agaaggaaactgaactctgatgtcacaaccttgtggacttgagttgtcgtttctacaaaaaaaaaaatattcaagaactctctctatccaagtgcacttt |
29900547 |
T |
|
| Q |
218 |
ttctgtatttaattttccccttcttttggttctaggcatatttccaagtttcaaccagtttagcatttcttttcagccattttgtcagcgtcaatttcta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29900548 |
ttctgtatttaattttccccttcttttggttctaggcatatttccaagtttcaaccagtttagcatttcttttcagccattttgtcagcgtcaatttcta |
29900647 |
T |
|
| Q |
318 |
tgacaatttcaaaac--tttgtcggtgtttatgctttttagggtatgtttgactatgttatccaatttataatctatactatgaaccatgttattaaagc |
415 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29900648 |
tgacaatttcaaaacgttttgtcggtgtttatgctttttagggtatgtttgactatgttatccaatttataatctatactatgaaccatgttattaaagc |
29900747 |
T |
|
| Q |
416 |
ttgactgtaatgaatctatccaattattaacctatgttgatgcattacacaatgtcacgtgaaaaccatgttattaaagcttgattgtaatgaatctatc |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
29900748 |
ttgactgtaatgaatctatccaattattaacctatgttgatgcattacacaatgtcacgtgaaaaccatgttattaaagcttgattgtaatgaatctaac |
29900847 |
T |
|
| Q |
516 |
aaattattaaccta |
529 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29900848 |
aaattattaaccta |
29900861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 183 - 480
Target Start/End: Original strand, 29886307 - 29886606
Alignment:
| Q |
183 |
tatattcaagaactctctctatccaagtgcactttttctgtatttaattttccccttcttttggttctaggcatatttccaa--gtttcaaccagtttag |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
29886307 |
tatattcaagaactctctctatccaagtgcactttttctgtatttaattttccccttcttttggttcttggcatatttccaaaagtttcaaccagtttag |
29886406 |
T |
|
| Q |
281 |
catttcttttcagccattttgtcagcgtcaatttctatgacaatttcaaaactttgtcggtgtttatgctttttagggtatgtttgactatgttatccaa |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29886407 |
catttcttttcagccattttgtcagcgtcaatttctatgacaatttcaaaactatgtcagtgtttatgctttttagggtatgtttgactatgttatccaa |
29886506 |
T |
|
| Q |
381 |
tttataatctatactatgaaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcattacacaatgtcacgtgaaaa |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
29886507 |
tttataatctatactatgaaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcattacacaatgtcacatgaaaa |
29886606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 29886132 - 29886281
Alignment:
| Q |
26 |
ttgtccaaatagaaaat-gcatcaattcaaaaggcataaaaggactgcagagagctgatgcatcaactcggggt-tgccactgttactcatatcagaagg |
123 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||| |
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|
| T |
29886132 |
ttgtccaaattgaaaattgcatcaattccaaaggcataaaaggactgcagagagctgatacatcaaccgggggggtgcccctgttactcatatcagaagg |
29886231 |
T |
|
| Q |
124 |
aaactgaactctgatgtcacaacgttgtggactagagttgtcgtttctac |
173 |
Q |
| |
|
|| || |||| |||| ||||||| ||||||||| |||||||| ||||||| |
|
|
| T |
29886232 |
aagctaaactatgatctcacaaccttgtggacttgagttgtcatttctac |
29886281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 297 - 468
Target Start/End: Original strand, 29896908 - 29897081
Alignment:
| Q |
297 |
ttttgtcagcgtcaatttctatgacaatttcaaaactttgtcggtgtttatgctttttagggt--atgtttgactatgttatccaatttataatctatac |
394 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||||||| ||| |||||||||| ||| ||||| |||||||| |||||||||||||| |||||||||| |
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|
| T |
29896908 |
ttttgtgagcatctatttctatgacaatttcaaaactatgttggtgtttatgaatttaagggtttatgtttgattatgttatccaattactaatctatac |
29897007 |
T |
|
| Q |
395 |
tatgaaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcattacacaat |
468 |
Q |
| |
|
||| ||||||||||| ||| ||||| || || || |||| | ||||||||||| | |||||| ||||| |||| |
|
|
| T |
29897008 |
tataaaccatgttatgaaatcttgatcgttattaacctattctattattaacctctattgatgtattactcaat |
29897081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 29900811 - 29900892
Alignment:
| Q |
399 |
aaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcattacacaatgtcacgtgaaaa |
480 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| | ||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
29900811 |
aaccatgttattaaagcttgattgtaatgaatctaacaaattattaacctacgctgatgcattacacaatgtcacgtgaaaa |
29900892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 297 - 462
Target Start/End: Original strand, 29904512 - 29904678
Alignment:
| Q |
297 |
ttttgtcagcgtcaatttctatgacaatttcaaaactttgtcggtgtttatgctttttagggt--atgtttgactatgttatccaatttataatctatac |
394 |
Q |
| |
|
|||||| ||| || |||||||||||||||| |||||| ||| ||||| ||||| ||| ||||| |||||||| |||||||||||||| |||||| || |
|
|
| T |
29904512 |
ttttgtgagcatctatttctatgacaattttaaaactatgttggtgtgtatgcatttaagggtttatgtttgattatgttatccaattacgaatctaaac |
29904611 |
T |
|
| Q |
395 |
tatgaaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcatta |
462 |
Q |
| |
|
||| |||||| |||||||||| ||| ||| ||| | |||||||||||||||||| |||||||||||| |
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|
| T |
29904612 |
tataaaccatattattaaagcatgattgtcatg-acctatccaattattaacctcagttgatgcatta |
29904678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 311 - 462
Target Start/End: Original strand, 29888190 - 29888343
Alignment:
| Q |
311 |
atttctatgacaatttcaaaactttgtcggtgtttatgctttttagggt--atgtttgactatgttatccaatttataatctatactatgaaccatgtta |
408 |
Q |
| |
|
|||||||||| ||||| |||||| ||| ||||||||||| | | ||||| ||| |||| ||||||| |||||| |||||||| |||| ||||||| || |
|
|
| T |
29888190 |
atttctatgataattttaaaactatgttggtgtttatgcatgtaagggtttatgattgattatgttacccaattactaatctattctataaaccatgcta |
29888289 |
T |
|
| Q |
409 |
ttaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcatta |
462 |
Q |
| |
|
|||||| |||| ||| || || |||||||||||||||||| ||||||||||||| |
|
|
| T |
29888290 |
ttaaagtttgattgtcatcaacctatccaattattaacctctgttgatgcatta |
29888343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 531
Target Start/End: Original strand, 29886525 - 29886577
Alignment:
| Q |
479 |
aaccatgttattaaagcttgattgtaatgaatctatcaaattattaacctatg |
531 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
29886525 |
aaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatg |
29886577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 531
Target Start/End: Original strand, 29900731 - 29900783
Alignment:
| Q |
479 |
aaccatgttattaaagcttgattgtaatgaatctatcaaattattaacctatg |
531 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
29900731 |
aaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatg |
29900783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 468
Target Start/End: Original strand, 29857095 - 29857317
Alignment:
| Q |
255 |
atatttccaagtttcaaccagtttagcatttcttttcagccatttt-gtcagcgtcaatttctatgacaatttcaaaactttgtcggtgtttatgctttt |
353 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||| |||||| || || | |||||||||||||||||| |||| ||| | || |||||| ||| |
|
|
| T |
29857095 |
atatttccaagtttcagccagtttagcatctcttttcagtcattttcctcggcattgatttctatgacaatttcataactatgttgttggttatgcattt |
29857194 |
T |
|
| Q |
354 |
tagg--gtatgtttgactat---gttatccaatt--ta-taatctatactatgaaccatgttattaaagcttgactgtaatgaatctatccaattattaa |
445 |
Q |
| |
|
||| ||||||||| | | |||||||||| || || |||||||||| |||||| ||| ||||| || | | | || |||||||||||||||| |
|
|
| T |
29857195 |
aaggatttatgtttgaatgtatatttatccaattactagtagtctatactataaaccattttaataaagatttattatcattggtctatccaattattaa |
29857294 |
T |
|
| Q |
446 |
cctatgttgatgcattacacaat |
468 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
29857295 |
gctttgttgatgcattacacaat |
29857317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 464
Target Start/End: Original strand, 29075504 - 29075654
Alignment:
| Q |
311 |
atttctatgacaatttcaaaactttgtcggtgtttatgctttttagggt--atgtttgactatgttatccaatttataatctatactatgaaccatgtta |
408 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| ||| ||||| ||| |||||||| || ||||||| ||||||||| |||||| ||| |
|
|
| T |
29075504 |
atttctatgacaatttcatagtcgtgtcggtgtttatgcatttaagggtttatgattgactatattgtccaattactaatctata-----aaccatttta |
29075598 |
T |
|
| Q |
409 |
ttaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcattaca |
464 |
Q |
| |
|
||||| ||||| | | || | |||| |||||||||| || ||||||||||||||| |
|
|
| T |
29075599 |
ttaaatcttgattatcattgacctattcaattattaagctttgttgatgcattaca |
29075654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 464
Target Start/End: Original strand, 29108666 - 29108816
Alignment:
| Q |
311 |
atttctatgacaatttcaaaactttgtcggtgtttatgctttttagggtatgt--ttgactatgttatccaatttataatctatactatgaaccatgtta |
408 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| ||| ||||| ||| |||||||| || ||||||| ||||||||| |||||| ||| |
|
|
| T |
29108666 |
atttctatgacaatttcatagtcgtgtcggtgtttatgcatttaagggtttgtgattgactatattgtccaattagtaatctata-----aaccatttta |
29108760 |
T |
|
| Q |
409 |
ttaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcattaca |
464 |
Q |
| |
|
||||| ||||| | | || | |||| |||||||||| || ||||||||||||||| |
|
|
| T |
29108761 |
ttaaatcttgattatcattgacctattcaattattaagctttgttgatgcattaca |
29108816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 299
Target Start/End: Complemental strand, 4366018 - 4365804
Alignment:
| Q |
94 |
ggggttgccactgttactcatatcagaaggaaactgaactctgatgt-cacaacgttgtggactagagttgtcgtttctacnnnnnnnnntatattcaag |
192 |
Q |
| |
|
|||| ||||||| | |||||||| |||||||| |||||||||||||| |||||| ||||||||| ||||| || ||||||| | ||||||| |
|
|
| T |
4366018 |
ggggatgccactatcactcatataagaaggaatctgaactctgatgtacacaaccttgtggacttgagttttcatttctacaaaaaaac--agattcaag |
4365921 |
T |
|
| Q |
193 |
aactctctctatccaagtgcac---tttttctgtatttaattttccccttcttttggttctaggc-------atatttccaagtttcaaccagtttagca |
282 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||| |||| ||||||||| |||||||||| | | ||| ||| |||||||||||| ||||||| |
|
|
| T |
4365920 |
aactttctctgtccaagtgcacttttttttctgaattttgttttcccctaattttggttctggtcaccaaagatacttctaagtttcaaccattttagca |
4365821 |
T |
|
| Q |
283 |
tttcttttcagccattt |
299 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
4365820 |
tctcttttcagccattt |
4365804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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