View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_high_65 (Length: 207)
Name: NF17649_high_65
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_high_65 |
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Alignment Details
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 35686258 - 35686324
Alignment:
| Q |
127 |
aacatttgaggctattcaatttcatcccaattagaaatatattattgaaatttgaaaagcacctatg |
193 |
Q |
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| T |
35686258 |
aacatttgaggctattcaatttcatcccaattagaaatatattattgaaatttgaaaagcacctatg |
35686324 |
T |
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Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35685947 - 35686004
Alignment:
| Q |
1 |
actctttatctttctcttaacctgattctctctcttgattattttatcattttttaat |
58 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35685947 |
actctttatctttctcttaacctgattctctctcttgattattttatcattttttaat |
35686004 |
T |
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