View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17649_high_8 (Length: 532)

Name: NF17649_high_8
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17649_high_8
NF17649_high_8
[»] chr6 (3 HSPs)
chr6 (18-522)||(1940568-1941075)
chr6 (193-486)||(1955479-1955771)
chr6 (238-436)||(1926695-1926893)
[»] chr4 (2 HSPs)
chr4 (87-175)||(34671556-34671644)
chr4 (92-177)||(53376407-53376492)
[»] chr1 (4 HSPs)
chr1 (97-175)||(41676561-41676639)
chr1 (82-175)||(42456912-42457005)
chr1 (148-181)||(32801036-32801069)
chr1 (82-118)||(12947612-12947648)
[»] chr8 (3 HSPs)
chr8 (91-168)||(6659599-6659675)
chr8 (91-168)||(6740001-6740077)
chr8 (138-177)||(26834701-26834740)
[»] chr3 (1 HSPs)
chr3 (82-175)||(48517479-48517572)
[»] chr7 (1 HSPs)
chr7 (149-177)||(425571-425599)
[»] chr2 (1 HSPs)
chr2 (140-176)||(23932707-23932743)


Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 1940568 - 1941075
Alignment:
Q  18 aacacatgcggtgatcttcactgtcgttattacttcatatatacgtctcattacgggtcattgcaaaactatgtatttaatataaaatgcacaagtttta 117  Q
    ||||||||| ||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1940568 aacacatgcagtgattttcactgtcgttattacttcatata--cgtctcattacgggtcattgcaaaactatgtatttaatataaaatgcacaagtttta 1940665  T
Q  118 atattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaacctatagnnnnnnnnnn-----atgttgattgcattaattta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||               ||||||||||||||||||||    
T  1940666 atattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaacctttagtttttttttttttttatgttgattgcattaattta 1940765  T
Q  213 tgtcatgatactaaaagttcaattgttttaggtatggattactgggaaagaaattcaaggacacatttgggcattccggaaactccatattgagtggatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1940766 tgtcatgatactaaaagttcaattgttttaggtatggattactgggaaagaaattcaaggacacatttgggcattccggaaactccatattgagtggatt 1940865  T
Q  313 tgtgggcatgaagagagcagaaaatcatggtgttccatactctttaactgaggaatttgctactgtctatagaatgcatccactcctgcctgatttcctg 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1940866 tgtgggcatgaagagagcagaaaatcatggtgttccatactctttaactgaggaatttgctagtgtctatagaatgcatccactcctgcctgatttcctg 1940965  T
Q  413 cacttgagagacacatctgcctctcctgggccaaacaaatctccgccattaatcaaagagtatgacaatatattatgatttttacatcatcataactatt 512  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1940966 cacttgagagacacatctgcctctcctgggcctaacaaatctccgccattaatcaaagagtatgacaatatattatgatttttacatcatcataactatt 1941065  T
Q  513 acgctctctg 522  Q
    |||| |||||    
T  1941066 acgccctctg 1941075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 193 - 486
Target Start/End: Original strand, 1955479 - 1955771
Alignment:
Q  193 atgttgattgcattaatttatgtcatgatactaaaagttcaattgttttaggtatggattactgggaaagaaattcaaggacacatttgggcattccgga 292  Q
    ||||| |||||||||| || ||||||| ||| |||| || | ||  ||||||||||||||| |||||||||||||||||||||| |||||||||   ||     
T  1955479 atgttcattgcattaacttttgtcatgttac-aaaatttgattttatttaggtatggattattgggaaagaaattcaaggacacgtttgggcatgttggt 1955577  T
Q  293 aactccatattgagtggatttgtgggcatgaagagagcagaaaatcatggtgttccatactctttaactgaggaatttgctactgtctatagaatgcatc 392  Q
     |||| || ||  ||||||| ||||||||||| | | |||| ||||||||||||||||||||| ||||||| |||||||  ||||||||||| ||||||     
T  1955578 gactctatcttaggtggattggtgggcatgaaaaaaccagataatcatggtgttccatactctctaactgaagaatttgtgactgtctataggatgcatg 1955677  T
Q  393 cactcctgcctgatttcctgcacttgagagacacatctgcctctcctgggccaaacaaatctccgccattaatcaaagagtatgacaatatatt 486  Q
    ||||||| |||||||   |||| |||||||||| ||||||| | || || | |||||||||||| ||| | ||||||||||||| ||| |||||    
T  1955678 cactcctacctgattctttgcatttgagagacatatctgccaccccaggacaaaacaaatctccaccactgatcaaagagtatgccaaaatatt 1955771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 238 - 436
Target Start/End: Original strand, 1926695 - 1926893
Alignment:
Q  238 ttttaggtatggattactgggaaagaaattcaaggacacatttgggcattccggaaactccatattgagtggatttgtgggcatgaagagagcagaaaat 337  Q
    |||||||||||||||| ||||||| ||| ||||||||| |||||||||||  |||    |||| ||||||||||||||||| ||||||| | || |||||    
T  1926695 ttttaggtatggattattgggaaaaaaaatcaaggacaaatttgggcattttggaggagccatcttgagtggatttgtgggtatgaagaaaccaaaaaat 1926794  T
Q  338 catggtgttccatactctttaactgaggaatttgctactgtctatagaatgcatccactcctgcctgatttcctgcacttgagagacacatctgcctct 436  Q
    |||||||||||||| |||||||||||||||||||  | ||||||||| ||||||| |||||| ||  |||  ||||| ||||| |||| ||||| ||||    
T  1926795 catggtgttccatattctttaactgaggaatttgtgagtgtctataggatgcatcaactcctacccaattctctgcatttgagggacatatctgactct 1926893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 34671644 - 34671556
Alignment:
Q  87 tatgtatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaa 175  Q
    ||||||||||||||||| || | |||||| || || ||||| | | |||||  |||||| |||||||||||||||||||||||||||||    
T  34671644 tatgtatttaatataaagtgtataagtttcaacataaacttatcacttttgccttcttattttatgcaagtttgcacatgatagaaaaa 34671556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 53376492 - 53376407
Alignment:
Q  92 atttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaacc 177  Q
    ||||||||||||||||||| |||||||||  ||||| ||| |||  | |||||||  | ||||| ||| ||||||||| |||||||    
T  53376492 atttaatataaaatgcacaggttttaatacaaacttcttattttaaacttcttaacatgtgcaaattttcacatgataaaaaaacc 53376407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 41676639 - 41676561
Alignment:
Q  97 atataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaa 175  Q
    ||||||||||||||||||||||||  || || ||| |||  |||||||||  | ||||| |||||||||||||||||||    
T  41676639 atataaaatgcacaagttttaatacaaaattattattttgaatttcttaacatgtgcaaatttgcacatgatagaaaaa 41676561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 42457005 - 42456912
Alignment:
Q  82 aaaactatgtatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaa 175  Q
    |||| ||| ||||||||||||||||||||| || |||||| |||||  || |||| | ||||||   |||| |||||||| |||||||||||||    
T  42457005 aaaattatttatttaatataaaatgcacaaattctaatataaacttactatttttaacttcttatactatgtaagtttgcgcatgatagaaaaa 42456912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 32801069 - 32801036
Alignment:
Q  148 ttatgcaagtttgcacatgatagaaaaacctata 181  Q
    |||||||||||||||||||||||||||| |||||    
T  32801069 ttatgcaagtttgcacatgatagaaaaatctata 32801036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 12947648 - 12947612
Alignment:
Q  82 aaaactatgtatttaatataaaatgcacaagttttaa 118  Q
    |||||||  ||||||||||||||||||||||||||||    
T  12947648 aaaactacctatttaatataaaatgcacaagttttaa 12947612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 6659675 - 6659599
Alignment:
Q  91 tatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgat 168  Q
    ||||||||||||||| |||||||||||| || || || ||| |||||| ||||||   ||||||||||||||||||||    
T  6659675 tatttaatataaaatacacaagttttaagataaatttatta-ttttgacttcttataatatgcaagtttgcacatgat 6659599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 6740077 - 6740001
Alignment:
Q  91 tatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgat 168  Q
    ||||||||||||||| |||||||||||| || || || ||| |||||| ||||||   ||||||||||||||||||||    
T  6740077 tatttaatataaaatacacaagttttaagataaatttatta-ttttgacttcttataatatgcaagtttgcacatgat 6740001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 26834701 - 26834740
Alignment:
Q  138 atttcttaatttatgcaagtttgcacatgatagaaaaacc 177  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  26834701 atttcttaatatatgcaaatttgcacatgatagaaaaacc 26834740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 48517572 - 48517479
Alignment:
Q  82 aaaactatgtatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaa 175  Q
    |||| ||| |||||||||||||||| | |||||| || || || ||  || |||| | || ||||||||| ||||||||||||||||| |||||    
T  48517572 aaaattatatatttaatataaaatgtataagtttgaagataaatttactacttttaactttttaatttattcaagtttgcacatgatacaaaaa 48517479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 425571 - 425599
Alignment:
Q  149 tatgcaagtttgcacatgatagaaaaacc 177  Q
    |||||||||||||||||||||||||||||    
T  425571 tatgcaagtttgcacatgatagaaaaacc 425599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 23932707 - 23932743
Alignment:
Q  140 ttcttaatttatgcaagtttgcacatgatagaaaaac 176  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  23932707 ttcttaatatatgcaaatttgcacatgatagaaaaac 23932743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University