View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17649_low_1 (Length: 739)
Name: NF17649_low_1
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 184 - 722
Target Start/End: Original strand, 5159249 - 5159780
Alignment:
| Q |
184 |
catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgtcatctaggattctccaagaattt |
283 |
Q |
| |
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||||| |||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159249 |
cattttctctttgacgcgataggttgccaacttcaatgagtaaatgccatctttatcatattcccataccaatttgtcatctaggattctccaagaattt |
5159348 |
T |
|
| Q |
284 |
gagacttcatcttcttgttttgtcatatgcactcnnnnnnnncttgaaattttttaaatagtcaaacataatttgtaaannnnnnn-ggggaatagttct |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5159349 |
gagacttcatcttcttgttttgtcatatgcactcaaaaaaaacttgaaattttttaaatagtcaaacataatttgtaaattttttttggggaatagttct |
5159448 |
T |
|
| Q |
383 |
tacagatttatttattgaaaattatatctctaactatgtactctcnnnnnnnn-ctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaag |
481 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159449 |
tacagatttatttattgaaa-ttatatctctaactatgtactctctttttttttctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaag |
5159547 |
T |
|
| Q |
482 |
atataatcaaatgaccggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggttttggggatggattgtt |
581 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5159548 |
ctataatcaaatgaacggctcaattgaaggtatgaatactaccaaacacaaataattaattcataactgcttcacggga------------tggattgtt |
5159635 |
T |
|
| Q |
582 |
acaatgaagataacttttttattgattttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattgacgccattggaaaaact |
677 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
5159636 |
acaatgaagataacttttttattgattttaaattttaaataattaacaaaaacaatgaaataagttaattaatgtatatattgacgccattggaaaaact |
5159735 |
T |
|
| Q |
678 |
ttaagatttttatgataatgtcaatttttgtaaagatgacaggac |
722 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5159736 |
ttaagatttttatgataatgtcaatttttgtaaagatgacaggac |
5159780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 370 - 722
Target Start/End: Original strand, 5195065 - 5195426
Alignment:
| Q |
370 |
ggggaatagttcttacagatttatttattgaaaattatatctctaactatgtactctcnnnnnnnn----ctgcagatgttcaacatttgaaaaacttga |
465 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
5195065 |
ggggaatagttcttaccgatttatttattgaaaattatatctctaactatgtactctctttttttttcttctgcagatgttcaacatttgaaaaatttga |
5195164 |
T |
|
| Q |
466 |
aaatgttaactttaagatataatcaaatgaccggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggtt |
565 |
Q |
| |
|
||||||||| ||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5195165 |
aaatgttaagtttaaacgataatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatggtt |
5195264 |
T |
|
| Q |
566 |
ttggggatggattgttacaatgaagataacttttttattgattttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattga |
661 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| |||||||| || ||||||||||||| |
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| T |
5195265 |
ttggggatcgattgttacaatgaagataacttttttttttattttaaattttaaataattaacaaaaacaacgaaataagttaattaatgtatatattga |
5195364 |
T |
|
| Q |
662 |
cgccattggaaaaac-tttaagatttttatgataatgtcaatttttgtaaagatgacaggac |
722 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5195365 |
cgccattggaaaaacttttaagatttttatgataatgtcaatttttgtaaagatgacaggac |
5195426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 409 - 722
Target Start/End: Original strand, 5181710 - 5182028
Alignment:
| Q |
409 |
tctctaactatgtactctcnnnnnnnnctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagatataatcaaatgaccggctcaattca |
508 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||| | |
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|
| T |
5181710 |
tctctaactatgtactctctttttttcctgcagatgttcaacatttgaaaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattga |
5181809 |
T |
|
| Q |
509 |
aggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggttttggggatggattgttacaatgaagataacttttttattgatt |
608 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5181810 |
aggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatggttttggggatggattgttacaatgaagataacttttatattgatt |
5181909 |
T |
|
| Q |
609 |
ttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattgacgccattggaaaaac-tttaagatttttatgataatgtcaatt |
703 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
5181910 |
ttaaattttaaataattaacaaaaagaatgaaataagttaattaatgtatatattgacgccattggaaaaacttttaagatttttatgataatgtcaatt |
5182009 |
T |
|
| Q |
704 |
tttgtaaagatgacaggac |
722 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
5182010 |
tttgtatagatgacaggac |
5182028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 183 - 315
Target Start/End: Original strand, 5181476 - 5181608
Alignment:
| Q |
183 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgtcatctaggattctccaagaatt |
282 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
5181476 |
ccatttcctctttgacgcgataggttgccgacttcaatgagtaaatgccatctttatcatattcccataccaatttctcatctaggattctccaagaatt |
5181575 |
T |
|
| Q |
283 |
tgagacttcatcttcttgttttgtcatatgcac |
315 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
5181576 |
tgagatttcatcttcttgttttgtcatatgcac |
5181608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 437 - 542
Target Start/End: Original strand, 5172489 - 5172594
Alignment:
| Q |
437 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagatataatcaaatgaccggctcaattcaaggtatgaatactaccaaacacaaataa |
536 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||||| |||||||||| ||||||| ||||||| |||||| |||||| |
|
|
| T |
5172489 |
tgcagatgttcaacacttgaaaaaattgaaaatgttaagtttaagctataatcaaatgaacggctcaattgaaggtatcaatactatcaaacataaataa |
5172588 |
T |
|
| Q |
537 |
ttaatt |
542 |
Q |
| |
|
|||||| |
|
|
| T |
5172589 |
ttaatt |
5172594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 437 - 542
Target Start/End: Complemental strand, 4843133 - 4843028
Alignment:
| Q |
437 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagatataatcaaatgaccggctcaattcaaggtatgaatactaccaaacacaaataa |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| ||||||| ||||||| |||||| |||||| |
|
|
| T |
4843133 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaaggttaagcgataatcaaatgaagggctcaattgaaggtatcaatactatcaaacataaataa |
4843034 |
T |
|
| Q |
537 |
ttaatt |
542 |
Q |
| |
|
|||||| |
|
|
| T |
4843033 |
ttaatt |
4843028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 652 - 714
Target Start/End: Original strand, 5172630 - 5172692
Alignment:
| Q |
652 |
tatatattgacgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagat |
714 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5172630 |
tatatattgagtccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagat |
5172692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 624 - 722
Target Start/End: Complemental strand, 4842927 - 4842825
Alignment:
| Q |
624 |
ttaacaaaaacaatgaaataagt----tgatgtatatattgacgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacag |
719 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |
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|
| T |
4842927 |
ttaacaaaaacaatgaaataagtaaattaatttatatattgagtccattggaaaaactttaagatttttatgataatgttaattttttgaaagatgaccg |
4842828 |
T |
|
| Q |
720 |
gac |
722 |
Q |
| |
|
||| |
|
|
| T |
4842827 |
gac |
4842825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 438 - 537
Target Start/End: Original strand, 5212716 - 5212815
Alignment:
| Q |
438 |
gcagatgttcaacatttgaaaaacttgaaaatgttaactttaagatataatcaaatgaccggctcaattcaaggtatgaatactaccaaacacaaataat |
537 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| |||| | | |||||||||| ||||||| || ||||||| |||| ||||||||||||||||| |
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|
| T |
5212716 |
gcagatgttcaacatttgagaaacttgaaaatgctaagtttatgcaacaatcaaatgaacggctcacttgaaggtattaatattaccaaacacaaataat |
5212815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 5194831 - 5194882
Alignment:
| Q |
183 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5194831 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgccatc |
5194882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 4843339 - 4843278
Alignment:
| Q |
184 |
catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatatt |
245 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
4843339 |
cattttctctttgacgcgatagtttgccgacttcaatgagtaaatgccatctttatcatatt |
4843278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 284
Target Start/End: Original strand, 5172339 - 5172374
Alignment:
| Q |
249 |
ataccaatttgtcatctaggattctccaagaatttg |
284 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5172339 |
ataccaatttgtcatcaaggattctccaagaatttg |
5172374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 392 - 426
Target Start/End: Complemental strand, 4843183 - 4843149
Alignment:
| Q |
392 |
atttattgaaaattatatctctaactatgtactct |
426 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
4843183 |
atttattgaatattatatctctaactatgtactct |
4843149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 4843461 - 4843423
Alignment:
| Q |
144 |
gaaaaaatatgttttgtcactctccacataatactcttt |
182 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
4843461 |
gaaaaaatatggtttgccactctccacataatactcttt |
4843423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 5172102 - 5172136
Alignment:
| Q |
148 |
aaatatgttttgtcactctccacataatactcttt |
182 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
5172102 |
aaatatgttttgccactctccacataatactcttt |
5172136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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