View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_11 (Length: 467)
Name: NF17649_low_11
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 308 - 452
Target Start/End: Original strand, 11165352 - 11165496
Alignment:
| Q |
308 |
ttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatct |
407 |
Q |
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| T |
11165352 |
ttgttctgcaaccttattatcttcaagccacttaaagaccaaatcaactgcgttattgatattttccttttcttttgacgaaagcttcgagctaacatct |
11165451 |
T |
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| Q |
408 |
ggatcatttatggaatccctcatattgtatgcgtacctctctagt |
452 |
Q |
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| T |
11165452 |
ggatcatttatggaatccctcatattgtatgcgtacctctctagt |
11165496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 271 - 452
Target Start/End: Original strand, 11208364 - 11208545
Alignment:
| Q |
271 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
370 |
Q |
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| T |
11208364 |
cacttgaaagaatgctcctataacactcaaaatcttgttgttctactaccttattagcgtcaagccacatgaagaccaaatcaactgcgttattgatctt |
11208463 |
T |
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| Q |
371 |
ttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacctctctagt |
452 |
Q |
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| T |
11208464 |
ttccttttcttttgacgaaagcttcgagctaacttctggatcatttatggaatccctcatattgtatgcgtacttctctagt |
11208545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 271 - 452
Target Start/End: Original strand, 11274926 - 11275107
Alignment:
| Q |
271 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
370 |
Q |
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| T |
11274926 |
cacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcattattgatgtt |
11275025 |
T |
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| Q |
371 |
ttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacctctctagt |
452 |
Q |
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| T |
11275026 |
ttccttttcttttaatgaaagcttcgagataatatcgggatcatttatgaaatccctcatattgtatgcgtacttctctagt |
11275107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 271 - 452
Target Start/End: Original strand, 11169542 - 11169723
Alignment:
| Q |
271 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
370 |
Q |
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| T |
11169542 |
cacttgaaagaatgctactataatgttcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattgatgtt |
11169641 |
T |
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| Q |
371 |
ttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacctctctagt |
452 |
Q |
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| T |
11169642 |
tgccttttcttttgacgaaatcttcgagctaatatccggatcatttatgaattccctcatattgtatgcgtacatctctagt |
11169723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 333 - 452
Target Start/End: Original strand, 11155325 - 11155444
Alignment:
| Q |
333 |
agccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatat |
432 |
Q |
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| T |
11155325 |
agccacgtaaagaccaaatcaagtgcattattgatcttttccttttcttttgacgaaagcatcaaactaatatccttatcatttatagcattcctcatgt |
11155424 |
T |
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| Q |
433 |
tgtatgcgtacctctctagt |
452 |
Q |
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| T |
11155425 |
tgtatgcatacgtctctagt |
11155444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 459
Target Start/End: Original strand, 11195772 - 11195898
Alignment:
| Q |
333 |
agccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatat |
432 |
Q |
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| T |
11195772 |
agccacatgaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcatcaaactaatgtccttatcatttatcgcattcctcatgt |
11195871 |
T |
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| Q |
433 |
tgtatgcgtacctctctagttcatctc |
459 |
Q |
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| T |
11195872 |
tgtatgcatacttctctaatacatctc |
11195898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 452
Target Start/End: Complemental strand, 11242198 - 11242016
Alignment:
| Q |
271 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
370 |
Q |
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| T |
11242198 |
cacttgaaagaatgctcctataacattcaaaatctcgttgttcttcaaccacattaacatcaagccatgtgaagaccaaat-aattgctttattaatctt |
11242100 |
T |
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| Q |
371 |
ttccttttct--tttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacctctctagt |
452 |
Q |
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| T |
11242099 |
ttccttttttcgttttacgaaagcttcgagcaaatatccttatcatttatggcattccttatgttgtatgcatacttctttagt |
11242016 |
T |
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