View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_12 (Length: 463)
Name: NF17649_low_12
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 30276714 - 30276271
Alignment:
| Q |
1 |
caaagagctgaaagatcgaatatagcctaagagagtgtccataaactcaaccctagaagaatctatagattttgtcgtaccatctccgccaagcgaatta |
100 |
Q |
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|||||| || |||||||| ||||| ||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276714 |
caaagatcttaaagatcgcatatatcctaagatattgtccataaactcaacccttgaagaatctatagattttgtcgtaccatctccgccaagcgaatta |
30276615 |
T |
|
| Q |
101 |
gaagctcttatcaatgatgtttcagaaaaactggatattctcatgtcagaaaacaaactagatgaagccttacaactcctagaatctgcatatgaagatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30276614 |
gaagctcttatcaatgatgtttcagaaaaactggatattctcatgtcagaaaacaaactagatgaagccttacaactcctagagtctgcatatgaagatg |
30276515 |
T |
|
| Q |
201 |
aatccctaactaatagtgatgatgagataatcttatataacactatgatttctgagaaaaagtccatggttataaaacaattggtacagatagttgagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276514 |
aatccctaactaatagtgatgatgagataatcttatataacactatgatttctgagaaaaagtccatggttataaaacaattggtacagatagttgagaa |
30276415 |
T |
|
| Q |
301 |
caaaagaatagaaggaccagaactaaaaagtgcactggctacactttgcaggcttggtgatactcaacttgctattcatctattgcttaaatattaccat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276414 |
caaaagaatagaaggaccagaactaaaaagtgcactggctacactttgcaggcttggtgatactcaacttgctattcatctattgcttaaatattaccat |
30276315 |
T |
|
| Q |
401 |
ttgtgtattgtaactggaacaaataatttgcagtgggaagattc |
444 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30276314 |
ctgtgtattgtaactggaacaaataattttcagtgggaagattc |
30276271 |
T |
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