View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_14 (Length: 451)
Name: NF17649_low_14
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 24832913 - 24833344
Alignment:
| Q |
1 |
ttgacagcaatataaaatcaaagatataaacgaatcacatacgaaactagaatnnnnnnnnnctccactataacactaataaagacagttcacttctcac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
24832913 |
ttgacagcaatataaaatcaaagatataaaagaatcacatacgaaactaaaataaaaaaaaactccactctaacactaataaagacagttcacttctcac |
24833012 |
T |
|
| Q |
101 |
acctcaaaaacagacgttaaacatgatttcaatttataaaacacagcttaccaattgcaggagtagtagccgccgaaacagtcgggagttgaagcattgt |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24833013 |
acctcaaaaacagacattaaacatgatttcaatttataaaacacagcttaccaactgcaggagtagtagccgccgaaacagtcgggagttgaagcattgt |
24833112 |
T |
|
| Q |
201 |
tagcaaatgaaaaacccatctcaaaagaagcagtatccagagccactattctacatggattgaagtcaaacttatgaattattttctaagattctcacta |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24833113 |
tagcaaatgaaaaactcatctcaaaagaagcagtcgccagagccactattctacatggattgaagtcaaacttatgaattattttctaagattctcacta |
24833212 |
T |
|
| Q |
301 |
ttgcaaatgtcaaagacacaaaaacaattactattgcaggcactgacatgcaataatgcaaatggacaagagtggacctatatcatggataaaatattga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
24833213 |
ttgcaaatgtcaaagacacaaaaacaattactattgcaggcactaacatgcaataatgcaaaaggacaagagtggacgtatatcatggataaaatattga |
24833312 |
T |
|
| Q |
401 |
aacattataaattattttaagcaacatatatta |
433 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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|
| T |
24833313 |
aacattat-aattattttaagcaacatatatta |
24833344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 433
Target Start/End: Original strand, 34669424 - 34669472
Alignment:
| Q |
385 |
atggataaaatattgaaacattataaattattttaagcaacatatatta |
433 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
34669424 |
atggataaaatcttgaaacattataaatttctttaagcaacatatatta |
34669472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 18186252 - 18186311
Alignment:
| Q |
302 |
tgcaaatgtcaaagacacaaaaacaattactattgcaggcactgacatgcaataatgcaaa |
362 |
Q |
| |
|
||||||||||||||| | | || | |||||||||||||||||| ||||||||||||||||| |
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|
| T |
18186252 |
tgcaaatgtcaaagaaagagaa-cgattactattgcaggcactaacatgcaataatgcaaa |
18186311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 433
Target Start/End: Original strand, 18186629 - 18186665
Alignment:
| Q |
397 |
ttgaaacattataaattattttaagcaacatatatta |
433 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |
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|
| T |
18186629 |
ttgaaacattataaatttctttaagcaacatatatta |
18186665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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