View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_15 (Length: 446)
Name: NF17649_low_15
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 202 - 398
Target Start/End: Complemental strand, 5155674 - 5155478
Alignment:
| Q |
202 |
ttatttctaaccgtctctcatgtaaaaataaataaattatcaaattagtcttaagaaactgttgacactaaaattaatcactccaaagtgaaaacggcgt |
301 |
Q |
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| T |
5155674 |
ttatttctaaccgtctctcatgtaaaaataaataaatcatcaaattagtcttaaaaaactgttgacactaaaattaatcactccaaagtgaaaacggcgt |
5155575 |
T |
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| Q |
302 |
gttttagttttggtaaaggaaagaacgcacgcgagtcatgatgattttggtgaattgactgactagcaaacctttctccagacaccgtcgcctccgg |
398 |
Q |
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| T |
5155574 |
gttttagttttggtaaaggaaagaacgcacgcgagtcatgatgattttggtgaattgactgactagcacacctttctccagacaccgtcgcctccgg |
5155478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 5157565 - 5157361
Alignment:
| Q |
8 |
agattattcttaaaaagtcatattgaaaactttgtgttttgatcacttcatcactttacagtttaagatataataattgtgttgagataagactaaatta |
107 |
Q |
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| T |
5157565 |
agattattcttaaaaagtcatattgaaaactttgtgttttgatcacttcatcactttacagtttaagatataataattgtgttgagataagactaaatta |
5157466 |
T |
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| Q |
108 |
acaatacactttataagtacaataatagaaccctt-nnnnnnnnnngtacaataatagaaacaaactagtggattgaattttttaaaaacatttattatt |
206 |
Q |
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| T |
5157465 |
acaatacactttataagtacaataatagaacccttaaaaaaaaaaagtacaataatagaaacaaactaatggattgaattttttaaaaacatttattatt |
5157366 |
T |
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| Q |
207 |
tctaa |
211 |
Q |
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| T |
5157365 |
tctaa |
5157361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 13824067 - 13824125
Alignment:
| Q |
34 |
aaactttgtgttttgatcacttcatcactttacagtttaagatataataattgtgttga |
92 |
Q |
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| T |
13824067 |
aaactttgtgttttgatcactccatcactttttggtttgagatctaataattgtgttga |
13824125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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