View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17649_low_16 (Length: 412)

Name: NF17649_low_16
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17649_low_16
NF17649_low_16
[»] chr1 (11 HSPs)
chr1 (20-402)||(29854973-29855344)
chr1 (207-318)||(3739813-3739925)
chr1 (207-326)||(3739805-3739925)
chr1 (207-311)||(19758276-19758382)
chr1 (240-318)||(19758304-19758382)
chr1 (271-321)||(29855122-29855172)
chr1 (240-326)||(47543590-47543676)
chr1 (246-311)||(3694026-3694091)
chr1 (296-329)||(43656287-43656320)
chr1 (240-316)||(6061493-6061569)
chr1 (207-326)||(37918905-37919025)
[»] chr5 (15 HSPs)
chr5 (214-312)||(39030568-39030667)
chr5 (207-312)||(15119302-15119408)
chr5 (207-311)||(39030562-39030667)
chr5 (218-326)||(2424429-2424538)
chr5 (260-315)||(26730107-26730162)
chr5 (212-316)||(42324884-42324989)
chr5 (260-324)||(9956551-9956615)
chr5 (207-311)||(19644398-19644502)
chr5 (260-327)||(34252707-34252774)
chr5 (213-278)||(2884067-2884133)
chr5 (240-286)||(28023956-28024002)
chr5 (214-311)||(33669933-33670031)
chr5 (241-311)||(38958067-38958137)
chr5 (243-311)||(14646398-14646466)
chr5 (260-292)||(40138825-40138857)
[»] chr2 (17 HSPs)
chr2 (207-311)||(31469077-31469182)
chr2 (207-311)||(31469070-31469175)
chr2 (207-311)||(38935369-38935474)
chr2 (214-327)||(944777-944891)
chr2 (260-317)||(7932743-7932800)
chr2 (214-326)||(10459272-10459385)
chr2 (204-311)||(11386303-11386413)
chr2 (240-323)||(41374562-41374645)
chr2 (240-311)||(43398871-43398942)
chr2 (207-311)||(10459272-10459377)
chr2 (238-289)||(37104881-37104932)
chr2 (271-325)||(2949034-2949088)
chr2 (214-311)||(16180441-16180539)
chr2 (207-256)||(17437187-17437237)
chr2 (208-300)||(7932743-7932836)
chr2 (202-318)||(24037583-24037700)
chr2 (271-327)||(14781910-14781966)
[»] chr3 (5 HSPs)
chr3 (207-329)||(46829048-46829164)
chr3 (207-325)||(32221469-32221588)
chr3 (208-318)||(46829048-46829152)
chr3 (268-317)||(11256586-11256635)
chr3 (213-289)||(22756880-22756956)
[»] chr7 (6 HSPs)
chr7 (214-307)||(16866407-16866501)
chr7 (268-312)||(27147602-27147646)
chr7 (240-311)||(5026146-5026217)
chr7 (207-236)||(1554917-1554946)
chr7 (209-284)||(5026141-5026217)
chr7 (209-256)||(6803308-6803356)
[»] chr6 (12 HSPs)
chr6 (225-308)||(2282415-2282499)
chr6 (246-318)||(8437813-8437885)
chr6 (236-311)||(28004652-28004727)
chr6 (240-318)||(35003758-35003836)
chr6 (207-326)||(9675753-9675866)
chr6 (209-311)||(31323820-31323923)
chr6 (207-317)||(33822287-33822398)
chr6 (214-311)||(31323820-31323918)
chr6 (267-312)||(7549780-7549825)
chr6 (296-333)||(30766318-30766355)
chr6 (210-253)||(7549777-7549821)
chr6 (261-289)||(29004192-29004220)
[»] chr4 (10 HSPs)
chr4 (214-318)||(12276819-12276924)
chr4 (202-311)||(12276814-12276924)
chr4 (260-326)||(55762917-55762983)
chr4 (246-310)||(54235261-54235325)
chr4 (207-253)||(55762928-55762975)
chr4 (236-289)||(41615714-41615767)
chr4 (215-311)||(54235228-54235325)
chr4 (271-311)||(2871562-2871602)
chr4 (270-318)||(48514598-48514646)
chr4 (263-311)||(55827297-55827345)
[»] scaffold2113 (1 HSPs)
scaffold2113 (207-311)||(576-680)
[»] chr8 (7 HSPs)
chr8 (240-318)||(8777768-8777846)
chr8 (207-311)||(35901041-35901146)
chr8 (214-318)||(35901041-35901146)
chr8 (209-315)||(33557777-33557884)
chr8 (207-291)||(8777768-8777853)
chr8 (214-253)||(7974850-7974890)
chr8 (240-316)||(9548082-9548158)
[»] scaffold0067 (1 HSPs)
scaffold0067 (207-311)||(35939-36044)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 402
Target Start/End: Complemental strand, 29855344 - 29854973
Alignment:
Q  20 atgtgatatacggttcattatcctatattcataatcatatgacacaaatcaatgttagatgttctatcatacattgtcatttctcaaaataatagaggag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29855344 atgtgatatacggttcattatcctatattcataatcatatgacacaaatcaatgttagatgttctatcatacattgtcatttctcaaaataatagaggag 29855245  T
Q  120 ttatcgaatggatacttttaaaatgaacaattgnnnnnnnttgagataattacttcagagaatcaatttctagaagttactattccaccgtcctaaaata 219  Q
    |            ||||||||||||||||||||       |||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  29855244 t------------acttttaaaatgaacaattgaaaaaaattgagataattatttccgagaatcaatttctagaagttactactccaccgtcctaaaata 29855157  T
Q  220 taaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaagacgg 318  Q
    ||| ||||||||| ||| ||||||||||||||||| |||| ||||||||| |||||||||||||||||||| | ||||||| |||||||||||  ||  |    
T  29855156 taagcaaaaattgatcaacaaaagttaatgtatttcgtacaaatttttaaccaaatacatcaacttttgttgattaattttcgcttatattttgggattg 29855057  T
Q  319 tgggagtataaattataatggcccacattttcaatgtatgtgaccactctatctttcttcacctctcttggctatatgcctatg 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29855056 tgggagtataaattataatggcccacattttcaatgtatgtgaccactctatctttcttcacctctcttggctatatgcctatg 29854973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 318
Target Start/End: Original strand, 3739813 - 3739925
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgctta 305  Q
    |||||| ||||||||| ||||||||||||| | ||||||||||||||| |||| ||||||||| ||||||||| |||||||||| || ||||||||||||    
T  3739813 ccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgctta 3739912  T
Q  306 tattttaagacgg 318  Q
    ||||||| |||||    
T  3739913 tattttaggacgg 3739925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 207 - 326
Target Start/End: Complemental strand, 3739925 - 3739805
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtc-acaaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgctta 305  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||| ||   || |||  | ||||||||| |||||| ||| || ||||||||||||    
T  3739925 ccgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgctta 3739826  T
Q  306 tattttaagacggtgggagta 326  Q
    ||||||  ||||| |||||||    
T  3739825 tattttgggacggagggagta 3739805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 311
Target Start/End: Complemental strand, 19758382 - 19758276
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttag-tactaatttttaatcaaatacatcaacttttgtta-actaatttttgct 303  Q
    ||||| ||||||||||  |||||||||||| ||||||||||||||||||| |  |||||| | | |||||||||||||||  |||| ||| |||||||||    
T  19758382 ccgtcataaaatataagtaaaaattggtcaacaaaagttaatgtatttagtttataatttgt-accaaatacatcaacttacgttatactcatttttgct 19758284  T
Q  304 tatatttt 311  Q
    || |||||    
T  19758283 tacatttt 19758276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 19758304 - 19758382
Alignment:
Q  240 aagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaagacgg 318  Q
    ||||| |||||||| |||| |||| | ||  |||||||| |||||||||| || ||||||| ||||||||||| |||||    
T  19758304 aagttgatgtatttggtacaaattataaactaaatacattaacttttgttgaccaatttttacttatattttatgacgg 19758382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 29855122 - 29855172
Alignment:
Q  271 aaatacatcaacttttgttaactaatttttgcttatattttaagacggtgg 321  Q
    |||||||| |||||||||| |  ||||||||||||||||||| ||||||||    
T  29855122 aaatacattaacttttgttgatcaatttttgcttatattttaggacggtgg 29855172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 47543676 - 47543590
Alignment:
Q  240 aagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaagacggtgggagta 326  Q
    ||||| |||||||| |||| |||||| || ||||| ||| || ||||||| || |||||||  |||||||||||||| | |||||||    
T  47543676 aagttgatgtatttggtacaaattttgaaccaaattcattaatttttgttgaccaattttttattatattttaagacagagggagta 47543590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 3694026 - 3694091
Alignment:
Q  246 atgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttt 311  Q
    ||||||||| ||| |||||| |||||||||||| || ||||||| || ||||| | ||||||||||    
T  3694026 atgtatttaatacaaattttgaatcaaatacattaatttttgttgaccaatttctacttatatttt 3694091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 43656287 - 43656320
Alignment:
Q  296 tttttgcttatattttaagacggtgggagtataa 329  Q
    ||||||||||||||||||||||| ||||||||||    
T  43656287 tttttgcttatattttaagacggagggagtataa 43656320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 6061493 - 6061569
Alignment:
Q  240 aagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaagac 316  Q
    |||||||||||| |||||| |||||| || ||||||||| || ||||||| || ||| |||||| | ||||| ||||    
T  6061493 aagttaatgtatctagtacaaattttaaaacaaatacattaatttttgttgaccaatatttgctcacattttgagac 6061569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 326
Target Start/End: Complemental strand, 37919025 - 37918905
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgctta 305  Q
    ||||| |||| ||||| | |||||| |||| ||||||| ||||||||| ||   || |||  ||||||||||||||||| |||| | | |||||||||||    
T  37919025 ccgtcttaaactataagcgaaaatttgtcaacaaaagtgaatgtatttggtttaaaatttatatcaaatacatcaacttatgttgattcatttttgctta 37918926  T
Q  306 tattttaagacggtgggagta 326  Q
     |||||  |||| ||||||||    
T  37918925 cattttgggacgatgggagta 37918905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 312
Target Start/End: Complemental strand, 39030667 - 39030568
Alignment:
Q  214 aaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttta 312  Q
    ||||||||| |||||||| |||| ||||||||||||||||| |||| ||||||||| ||||||||| |||||||||| || |||||||||||||||||||    
T  39030667 aaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatatttta 39030568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 15119408 - 15119302
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtcacaa-aagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgctta 305  Q
    |||| ||||||||||||||||||||||| |  | |||||||| |||||| ||| |||||| |||||||||||| || |||| || |||||||||||||||    
T  15119408 ccgttctaaaatataaacaaaaattggttaatataagttaatatatttaatacaaattttgaatcaaatacattaagttttattgactaatttttgctta 15119309  T
Q  306 tatttta 312  Q
    |||||||    
T  15119308 tatttta 15119302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 207 - 311
Target Start/End: Original strand, 39030562 - 39030667
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgctta 305  Q
    |||| ||||||||||| ||||||||||||| ||||||||||||||||| ||   || |||  | ||||||||| |||||||||| |||||||||||||||    
T  39030562 ccgttctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgctta 39030661  T
Q  306 tatttt 311  Q
    ||||||    
T  39030662 tatttt 39030667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 326
Target Start/End: Complemental strand, 2424538 - 2424429
Alignment:
Q  218 tataaacaaaaattggtc-acaaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaagac 316  Q
    |||||||||||||||||| | |||||||||||||||| || | || |||  | || |||||||| ||| ||||||| |||||||||||||||||||  ||    
T  2424538 tataaacaaaaattggtcgataaaagttaatgtatttggttcaaaatttgtaccatatacatcagcttatgttaacaaatttttgcttatattttagcac 2424439  T
Q  317 ggtgggagta 326  Q
    || |||||||    
T  2424438 ggagggagta 2424429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 26730107 - 26730162
Alignment:
Q  260 aatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaaga 315  Q
    ||||||||||||||||||| ||||||||||||| |||||||   ||||||||||||    
T  26730107 aatttttaatcaaatacattaacttttgttaaccaatttttatctatattttaaga 26730162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 42324884 - 42324989
Alignment:
Q  212 ctaaaatataaacaaaaattggtc-acaaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatattt 310  Q
    ||||||||||||  |||||||||| | | || || |||||||| |||  |||||| || ||||||||| |||||||||| || ||||||| |||||||||    
T  42324884 ctaaaatataaattaaaattggtcaatataaattgatgtatttggtataaattttaaaacaaatacattaacttttgttgaccaatttttacttatattt 42324983  T
Q  311 taagac 316  Q
    | ||||    
T  42324984 tgagac 42324989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 9956551 - 9956615
Alignment:
Q  260 aatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaagacggtgggag 324  Q
    |||||| |||||||||||| ||||||||||||| ||||||| |||| |||||  ||||| |||||    
T  9956551 aattttgaatcaaatacattaacttttgttaaccaatttttacttacattttgggacggagggag 9956615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 311
Target Start/End: Original strand, 19644398 - 19644502
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtcacaaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttat 306  Q
    ||||||||||||||||||||||||   | ||| ||||| ||||||||||||  |||||| || ||||||| | || ||||||| |  |||| || |||||    
T  19644398 ccgtcctaaaatataaacaaaaataatttacataagttgatgtatttagtataaattttgaaccaaatacgttaatttttgttgatcaattcttacttat 19644497  T
Q  307 atttt 311  Q
    |||||    
T  19644498 atttt 19644502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 34252774 - 34252707
Alignment:
Q  260 aatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaagacggtgggagtat 327  Q
    |||||| || ||||||||| |||||||||| || |||||||||||| |||||  ||||| ||||||||    
T  34252774 aattttgaaccaaatacattaacttttgttgaccaatttttgcttacattttgggacggagggagtat 34252707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 2884133 - 2884067
Alignment:
Q  213 taaaatataaacaaaaattggtcac-aaaagttaatgtatttagtactaatttttaatcaaatacat 278  Q
    ||||||||||  ||||||||||||  |||| |||||||||||| ||| |||||| ||||||||||||    
T  2884133 taaaatataagtaaaaattggtcaataaaatttaatgtatttaatacaaattttaaatcaaatacat 2884067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 28023956 - 28024002
Alignment:
Q  240 aagttaatgtatttagtactaatttttaatcaaatacatcaactttt 286  Q
    |||||||||||||| |||| |||||| |||||||||||| |||||||    
T  28023956 aagttaatgtattttgtacaaattttgaatcaaatacattaactttt 28024002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 33669933 - 33670031
Alignment:
Q  214 aaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttt 311  Q
    ||||| ||| ||||||| ||||| || |||||| ||||| | |||| |||||| || ||||||||| ||||||| || || |||||||||||| |||||    
T  33669933 aaaatgtaagcaaaaatgggtcaacataagttagtgtatctggtacaaattttaaaccaaatacattaactttttttgaccaatttttgcttacatttt 33670031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 38958137 - 38958067
Alignment:
Q  241 agttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttt 311  Q
    |||| |||||||| |||| || ||| || ||||||||| ||||||||||||  ||||||| ||||||||||    
T  38958137 agttgatgtatttggtacaaaatttgaaccaaatacattaacttttgttaatcaatttttacttatatttt 38958067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 14646398 - 14646466
Alignment:
Q  243 ttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttt 311  Q
    |||||||||||||||| |||||| ||||| |||||| || |||| || |  |||||| |||||||||||    
T  14646398 ttaatgtatttagtacaaattttgaatcatatacattaatttttatttatcaattttcgcttatatttt 14646466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 40138857 - 40138825
Alignment:
Q  260 aatttttaatcaaatacatcaacttttgttaac 292  Q
    ||||||||||||||||||||||||||| |||||    
T  40138857 aatttttaatcaaatacatcaacttttattaac 40138825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 207 - 311
Target Start/End: Complemental strand, 31469182 - 31469077
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgctta 305  Q
    |||||| ||||||||| ||||||||||||| | |||||||||||||||  ||| ||||||||| ||||||||| |||||||||| || ||||||||||||    
T  31469182 ccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgctta 31469083  T
Q  306 tatttt 311  Q
    ||||||    
T  31469082 tatttt 31469077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 207 - 311
Target Start/End: Original strand, 31469070 - 31469175
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgctta 305  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||||| ||   || |||  ||||||||||| |||||| ||| || ||||||||||||    
T  31469070 ccgtcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgctta 31469169  T
Q  306 tatttt 311  Q
    ||||||    
T  31469170 tatttt 31469175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 207 - 311
Target Start/End: Complemental strand, 38935474 - 38935369
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgctta 305  Q
    |||||| ||||||||||||||||||  ||| ||||||||||||||||| || | || | |  ||||||||||||||||| |||| ||| |||||||||||    
T  38935474 ccgtccaaaaatataaacaaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgctta 38935375  T
Q  306 tatttt 311  Q
    ||||||    
T  38935374 tatttt 38935369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 327
Target Start/End: Original strand, 944777 - 944891
Alignment:
Q  214 aaaatataaacaaaaattggtcac-aaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttta 312  Q
    ||||||||| ||||||| | |||  ||||||||||||||||||| | || |||  | ||||||||||||||| |||| |||||||||| |||| |||||     
T  944777 aaaatataagcaaaaatcgatcaataaaagttaatgtatttagttcaaaatttgtaccaaatacatcaacttatgttgactaatttttacttacattttg 944876  T
Q  313 agacggtgggagtat 327  Q
    |||||| ||||||||    
T  944877 agacggagggagtat 944891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 7932800 - 7932743
Alignment:
Q  260 aatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaagacg 317  Q
    |||||| || ||||||| | |||||||||| |||||||||||||||||||||||||||    
T  7932800 aattttgaaccaaatacgttaacttttgttgactaatttttgcttatattttaagacg 7932743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 326
Target Start/End: Original strand, 10459272 - 10459385
Alignment:
Q  214 aaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttta 312  Q
    ||||||||| ||||||||||||| ||||||||||||||||| || | || |||  |||| || ||||||||| |||| || ||| |||||||| |||||     
T  10459272 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatctttgcttacattttg 10459371  T
Q  313 agacggtgggagta 326  Q
     ||||| |||||||    
T  10459372 ggacggagggagta 10459385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 11386303 - 11386413
Alignment:
Q  204 ccaccgtcctaaaatata--aacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaattttt 300  Q
    ||||||||||||||||||  ||||||||||| ||| ||||| ||||| |||||| | | || |||  ||||||||||||||||| |||| |  || ||||    
T  11386303 ccaccgtcctaaaatatataaacaaaaattgatcaacaaaaattaatatatttaattcaaaatttgtatcaaatacatcaacttatgttgatcaaatttt 11386402  T
Q  301 gcttatatttt 311  Q
    |||||||||||    
T  11386403 gcttatatttt 11386413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 41374562 - 41374645
Alignment:
Q  240 aagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaagacggtggga 323  Q
    ||||| |||||||| |||  || ||| |||||||||||| |||||| ||| |||||||||| |||||||||| |||||| ||||    
T  41374562 aagttgatgtatttggtataaactttgaatcaaatacattaactttcgttgactaatttttacttatattttgagacggaggga 41374645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 43398871 - 43398942
Alignment:
Q  240 aagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttt 311  Q
    ||||| |||||||| |||| |||||| || ||||||||| ||||||||||||| |||||||| ||| |||||    
T  43398871 aagttgatgtatttggtacaaattttgaaccaaatacattaacttttgttaacaaatttttgtttagatttt 43398942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 311
Target Start/End: Complemental strand, 10459377 - 10459272
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgctta 305  Q
    |||||| ||||| ||| |||| |||||||| || ||||| ||| || |  ||| |||||| || ||||||||| |||||||||| || ||||||||||||    
T  10459377 ccgtcccaaaatgtaagcaaagattggtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaacttttgttgaccaatttttgctta 10459278  T
Q  306 tatttt 311  Q
    ||||||    
T  10459277 tatttt 10459272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 37104932 - 37104881
Alignment:
Q  238 aaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgtt 289  Q
    |||||||||||||||| || | |||| ||||||||||||||||| |||||||    
T  37104932 aaaagttaatgtatttggttcaaattcttaatcaaatacatcaatttttgtt 37104881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 2949088 - 2949034
Alignment:
Q  271 aaatacatcaacttttgttaactaatttttgcttatattttaagacggtgggagt 325  Q
    |||||||| | ||||||||||| |||||||||||| ||||| |||||| ||||||    
T  2949088 aaatacattagcttttgttaaccaatttttgcttacattttgagacggagggagt 2949034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 16180539 - 16180441
Alignment:
Q  214 aaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttt 311  Q
    |||||||||  |||| ||||||| ||||||||||||||||| || | || |||  ||  |||||||||| || |||| ||||||||||||||| |||||    
T  16180539 aaaatataagtaaaatttggtcaacaaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgcttacatttt 16180441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 17437237 - 17437187
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtc-acaaaagttaatgtatttagt 256  Q
    |||||| |||||||||||||||||| ||| |||||| ||||||||||||||    
T  17437237 ccgtcccaaaatataaacaaaaatttgtcaacaaaaattaatgtatttagt 17437187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 7932743 - 7932836
Alignment:
Q  208 cgtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaattttt 300  Q
    |||| |||||||||| |||||||| |||| |||||||||| |||||| || | || |||  |||| |||||||||||| |||| ||| ||||||    
T  7932743 cgtcttaaaatataagcaaaaattagtcaacaaaagttaacgtatttggttcaaaatttatatcagatacatcaacttatgttgactcattttt 7932836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 318
Target Start/End: Complemental strand, 24037700 - 24037583
Alignment:
Q  202 ttccaccgtcctaaaatataaacaaaaattggtc-acaaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaattttt 300  Q
    |||| |||||||||||  ||| ||||||| |||| ||| ||||| |||||||| || | || |||  | |||||| |||||||| |||| ||| ||||||    
T  24037700 ttcctccgtcctaaaaagtaagcaaaaatgggtcgacataagttgatgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactcattttt 24037601  T
Q  301 gcttatattttaagacgg 318  Q
    ||||| |||||| |||||    
T  24037600 gcttacattttaggacgg 24037583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 14781966 - 14781910
Alignment:
Q  271 aaatacatcaacttttgttaactaatttttgcttatattttaagacggtgggagtat 327  Q
    |||||||| |||||| |||||  ||||||| ||||||||||| ||||||| ||||||    
T  14781966 aaatacattaactttcgttaatcaatttttacttatattttaggacggtgagagtat 14781910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 207 - 329
Target Start/End: Original strand, 46829048 - 46829164
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgctta 305  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||||| |||       || ||||||||||| |||||||||| || ||||||||||||    
T  46829048 ccgtcctaaaatataagcaaaaattggtcaacaaaagtcaatgtatttggta-------tttatcaaatacattaacttttgttgaccaatttttgctta 46829140  T
Q  306 tattttaagacggtgggagtataa 329  Q
    ||||||| ||||  ||||||||||    
T  46829141 tattttaggacgaagggagtataa 46829164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 32221469 - 32221588
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgctta 305  Q
    |||||| ||||| ||| ||||||||| ||| || || || |||||||| |||| |||||| || ||||||||| |||||||||| |||||||||||||||    
T  32221469 ccgtcccaaaatgtaagcaaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgctta 32221568  T
Q  306 tattttaagacggtgggagt 325  Q
     ||||| | |||| ||||||    
T  32221569 cattttgatacggagggagt 32221588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 318
Target Start/End: Complemental strand, 46829152 - 46829048
Alignment:
Q  208 cgtcctaaaatataaacaaaaattggtc-acaaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttat 306  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||  ||  |||     | |||||||||  ||||||||| || |||||||||||||    
T  46829152 cgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttgata--aat-----accaaatacattgacttttgttgaccaatttttgcttat 46829060  T
Q  307 attttaagacgg 318  Q
    |||||| |||||    
T  46829059 attttaggacgg 46829048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 11256586 - 11256635
Alignment:
Q  268 atcaaatacatcaacttttgttaactaatttttgcttatattttaagacg 317  Q
    ||||||||||||||| | |||||| | ||||||||||||||||| |||||    
T  11256586 atcaaatacatcaacatatgttaattcatttttgcttatattttgagacg 11256635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 22756880 - 22756956
Alignment:
Q  213 taaaatataaacaaaaattggtcacaaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgtt 289  Q
    |||||||||||  ||||||||||||| || |  |||||||| |||  |||||| |||||||||| | ||||||||||    
T  22756880 taaaatataaaataaaattggtcacataaatcgatgtatttggtataaattttgaatcaaatacgttaacttttgtt 22756956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 16866407 - 16866501
Alignment:
Q  214 aaaatataaacaaaaattggtcac-aaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttata 307  Q
    ||||||||| ||||||||| |||  |||||||||||||||  |||| ||||||||| ||||||||| |||||||||| || ||||||||||||||    
T  16866407 aaaatataagcaaaaattgatcaataaaagttaatgtattaggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttata 16866501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 27147646 - 27147602
Alignment:
Q  268 atcaaatacatcaacttttgttaactaatttttgcttatatttta 312  Q
    ||||||||||| |||||||||| |||||||||| |||||||||||    
T  27147646 atcaaatacattaacttttgttgactaatttttacttatatttta 27147602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 5026217 - 5026146
Alignment:
Q  240 aagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttt 311  Q
    ||||| |||||||| |||| ||||||  |  ||||| || ||||||||||||| ||||||||||||||||||    
T  5026217 aagttgatgtatttggtacaaattttggactaaatatattaacttttgttaaccaatttttgcttatatttt 5026146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 1554946 - 1554917
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtca 236  Q
    ||||||||||||||||||||||||||||||    
T  1554946 ccgtcctaaaatataaacaaaaattggtca 1554917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 284
Target Start/End: Original strand, 5026141 - 5026217
Alignment:
Q  209 gtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaactt 284  Q
    |||| ||||||||| ||||||||||| | ||||||||||| |||||||| | || |||  | |||||||||||||||    
T  5026141 gtcccaaaatataagcaaaaattggttaacaaaagttaatatatttagtccaaaatttgtaccaaatacatcaactt 5026217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 6803308 - 6803356
Alignment:
Q  209 gtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagt 256  Q
    |||| ||||||||| ||||| ||||||| ||||||||||||||||||||    
T  6803308 gtcccaaaatataagcaaaatttggtcaacaaaagttaatgtatttagt 6803356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 2282415 - 2282499
Alignment:
Q  225 aaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatat 308  Q
    |||||||||||| |||||||||||||||||||| | ||  ||  |||||||||||||| || |||||||||||||||||||||||    
T  2282415 aaaaattggtcaacaaaagttaatgtatttagttcaaaaattgtatcaaatacatcaatttatgttaactaatttttgcttatat 2282499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 8437813 - 8437885
Alignment:
Q  246 atgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaagacgg 318  Q
    |||||||| |||| |||||| |||||||||||| || ||||||| ||||| |||| |||||||||| ||||||    
T  8437813 atgtatttggtacaaattttgaatcaaatacattaatttttgttgactaaattttacttatattttgagacgg 8437885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 311
Target Start/End: Original strand, 28004652 - 28004727
Alignment:
Q  236 acaaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttt 311  Q
    |||||| ||||||||||| |||| |||||| |  ||||||||| |||||||||| |||||||||  ||||||||||    
T  28004652 acaaaaattaatgtatttggtacaaattttgagccaaatacattaacttttgttgactaattttcccttatatttt 28004727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 35003836 - 35003758
Alignment:
Q  240 aagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaagacgg 318  Q
    ||||| || ||||| |||| |||||| |||||||||||| || |||| ||||| ||||||| ||||||||||| |||||    
T  35003836 aagttgatatattttgtacaaattttgaatcaaatacattaatttttattaaccaatttttacttatattttaggacgg 35003758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 326
Target Start/End: Complemental strand, 9675866 - 9675753
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtcacaaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttat 306  Q
    ||||||||||||||||  |||||||||      ||||||||||||||| ||| || |||  | || || ||||||||| |||| || ||||||||||||     
T  9675866 ccgtcctaaaatataagtaaaaattgg------aagttaatgtatttaatacaaaatttgtaccagatgcatcaacttatgttgaccaatttttgcttac 9675773  T
Q  307 attttaagacggtgggagta 326  Q
    ||||| |||||| |||||||    
T  9675772 attttgagacggagggagta 9675753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 311
Target Start/End: Complemental strand, 31323923 - 31323820
Alignment:
Q  209 gtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttata 307  Q
    |||| ||||| ||| ||||||| ||||| || ||||| |||||| | |||| |||||| ||  |||||||| |||||||||| || |||||||||||| |    
T  31323923 gtcccaaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatttttgcttaca 31323824  T
Q  308 tttt 311  Q
    ||||    
T  31323823 tttt 31323820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 33822287 - 33822398
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgctta 305  Q
    |||||||||||| |||| |||||||| | | ||||||||||| |||||||| | || |||  ||||||||||||||||| | ||||   |||||| ||||    
T  33822287 ccgtcctaaaatgtaaataaaaattgattaacaaaagttaatatatttagttcaaaatttgtatcaaatacatcaacttatattaatccatttttactta 33822386  T
Q  306 tattttaagacg 317  Q
     ||||| |||||    
T  33822387 cattttgagacg 33822398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 31323820 - 31323918
Alignment:
Q  214 aaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttt 311  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| || | || |||  | || |||||||||||| |||| ||  ||||||||||| |||||    
T  31323820 aaaatgtaagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacatttt 31323918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 7549825 - 7549780
Alignment:
Q  267 aatcaaatacatcaacttttgttaactaatttttgcttatatttta 312  Q
    |||||||||||| |||||||||  || |||||||||||||||||||    
T  7549825 aatcaaatacattaacttttgtacaccaatttttgcttatatttta 7549780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 30766355 - 30766318
Alignment:
Q  296 tttttgcttatattttaagacggtgggagtataaatta 333  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  30766355 tttttgcttatattttaagacggagggagtattaatta 30766318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 7549777 - 7549821
Alignment:
Q  210 tcctaaaatataaacaaaaattggt-cacaaaagttaatgtattt 253  Q
    ||||||||||||| |||||||||||  ||||||||||||||||||    
T  7549777 tcctaaaatataagcaaaaattggtgtacaaaagttaatgtattt 7549821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 289
Target Start/End: Complemental strand, 29004220 - 29004192
Alignment:
Q  261 atttttaatcaaatacatcaacttttgtt 289  Q
    |||||||||||||||||||||||||||||    
T  29004220 atttttaatcaaatacatcaacttttgtt 29004192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 318
Target Start/End: Complemental strand, 12276924 - 12276819
Alignment:
Q  214 aaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttta 312  Q
    ||||||||| ||||||| ||||| || ||||| ||||||||||||  |||||| |||||||||||| |||||||| | || ||| ||| |||||||||||    
T  12276924 aaaatataagcaaaaataggtcaacataagttgatgtatttagtataaattttgaatcaaatacattaacttttgctgaccaatctttacttatatttta 12276825  T
Q  313 agacgg 318  Q
     |||||    
T  12276824 ggacgg 12276819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 12276814 - 12276924
Alignment:
Q  202 ttccaccgtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaattttt 300  Q
    |||| ||||||||||||||||  ||| |||||||| |||||||||||||||||  | | || |||  |  |||||||||||||| |||| ||  ||||||    
T  12276814 ttcctccgtcctaaaatataagtaaagattggtcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctattttt 12276913  T
Q  301 gcttatatttt 311  Q
    |||||||||||    
T  12276914 gcttatatttt 12276924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 55762917 - 55762983
Alignment:
Q  260 aatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaagacggtgggagta 326  Q
    |||||||||||||||| || |||||||||| || |||||||| |||||||||  ||||| |||||||    
T  55762917 aatttttaatcaaatatattaacttttgttgaccaatttttgtttatattttgggacggagggagta 55762983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 54235261 - 54235325
Alignment:
Q  246 atgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatattt 310  Q
    ||||||||||||| |||||| || ||||||||| |||||||||| |  |||||||| ||||||||    
T  54235261 atgtatttagtacaaattttgaaccaaatacattaacttttgttgagcaatttttgtttatattt 54235325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 55762975 - 55762928
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtc-acaaaagttaatgtattt 253  Q
    |||||| |||||||||||||||||||||| |||||||||||| |||||    
T  55762975 ccgtcccaaaatataaacaaaaattggtcaacaaaagttaatatattt 55762928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 41615767 - 41615714
Alignment:
Q  236 acaaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgtt 289  Q
    |||||||||||||||||| |   ||||||||||  |||||||||||||||||||    
T  41615767 acaaaagttaatgtatttggacttaatttttaactaaatacatcaacttttgtt 41615714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 311
Target Start/End: Complemental strand, 54235325 - 54235228
Alignment:
Q  215 aaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttt 311  Q
    |||||||||||||||||| ||| ||||||||||||||||| || | || |||  |  ||||||||||| || | || ||| ||||||||||| |||||    
T  54235325 aaatataaacaaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcatttttgcttacatttt 54235228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 2871562 - 2871602
Alignment:
Q  271 aaatacatcaacttttgttaactaatttttgcttatatttt 311  Q
    ||||||||||||||||||| ||  |||||||||||||||||    
T  2871562 aaatacatcaacttttgtttaccgatttttgcttatatttt 2871602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 48514598 - 48514646
Alignment:
Q  270 caaatacatcaacttttgttaactaatttttgcttatattttaagacgg 318  Q
    ||||||||| |||||||||| ||||||||||| ||||||| | ||||||    
T  48514598 caaatacattaacttttgttgactaatttttgtttatattgtgagacgg 48514646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 55827297 - 55827345
Alignment:
Q  263 ttttaatcaaatacatcaacttttgttaactaatttttgcttatatttt 311  Q
    |||||| |||||| || |||||||||| || ||||||||||||||||||    
T  55827297 ttttaaccaaatatattaacttttgttgaccaatttttgcttatatttt 55827345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 311
Target Start/End: Original strand, 576 - 680
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtcacaaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttat 306  Q
    |||||| ||| ||||| ||||| ||||| |||||||||||| ||||| |||| |||||| ||  |||||||  |||||||||| |||||||||  |||||    
T  576 ccgtcccaaagtataagcaaaatttggtaacaaaagttaatttatttggtacaaattttgaactaaatacaataacttttgttgactaattttcacttat 675  T
Q  307 atttt 311  Q
    |||||    
T  676 atttt 680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 8777846 - 8777768
Alignment:
Q  240 aagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaagacgg 318  Q
    ||||||||||||||| ||  |||||| || |||||| || |||||||||| |  |||||||| ||||||||||||||||    
T  8777846 aagttaatgtatttaatataaattttgaaccaaatatattaacttttgttgatcaatttttgtttatattttaagacgg 8777768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 311
Target Start/End: Complemental strand, 35901146 - 35901041
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtc-acaaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgctta 305  Q
    |||||||||||||||| ||||||| |||| |||||||||||||||||  |  | || |||  |  || ||||||||||| |||| ||| |||||||||||    
T  35901146 ccgtcctaaaatataagcaaaaataggtcaacaaaagttaatgtattgggctcaaaatttgtactaattacatcaacttatgttgactcatttttgctta 35901047  T
Q  306 tatttt 311  Q
    ||||||    
T  35901046 tatttt 35901041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 318
Target Start/End: Original strand, 35901041 - 35901146
Alignment:
Q  214 aaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatatttta 312  Q
    ||||||||| |||||||  |||| || ||||| ||||| ||||||| |||||| |  | ||||||| |||||||||| ||  ||||||||||||||||||    
T  35901041 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgagcccaatacattaacttttgttgacctatttttgcttatatttta 35901140  T
Q  313 agacgg 318  Q
     |||||    
T  35901141 ggacgg 35901146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 315
Target Start/End: Complemental strand, 33557884 - 33557777
Alignment:
Q  209 gtcctaaaatataaacaaaaattggtcac-aaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttata 307  Q
    ||||||||| ||||  |||||||| |||  ||||||||||||||||||| | || |||  ||||||||||| ||||| |||| |  | |||||||||| |    
T  33557884 gtcctaaaacataagtaaaaattgatcaataaaagttaatgtatttagttcaaaatttgtatcaaatacataaacttatgttgatcattttttgcttaca 33557785  T
Q  308 ttttaaga 315  Q
    ||||||||    
T  33557784 ttttaaga 33557777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 8777768 - 8777853
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtc-acaaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaa 291  Q
    ||||| |||||||||||||||||||| || |||||||||||| ||||| || | || |||  || |||||||| ||||| ||||||    
T  8777768 ccgtcttaaaatataaacaaaaattgatcaacaaaagttaatatatttggttcaaaatttatattaaatacattaacttatgttaa 8777853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 253
Target Start/End: Complemental strand, 7974890 - 7974850
Alignment:
Q  214 aaaatataaacaaaaattggtc-acaaaagttaatgtattt 253  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  7974890 aaaatataaacaaaaattggtcaataaaagttaatgtattt 7974850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 9548082 - 9548158
Alignment:
Q  240 aagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgcttatattttaagac 316  Q
    ||||| ||||||||||||| |||||| || |||||| |  || ||||||| |  |||||||| ||||||||||||||    
T  9548082 aagttgatgtatttagtacaaattttgaaccaaatataataatttttgttgaacaatttttgtttatattttaagac 9548158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 311
Target Start/End: Original strand, 35939 - 36044
Alignment:
Q  207 ccgtcctaaaatataaacaaaaattggtca-caaaagttaatgtatttagtactaatttttaatcaaatacatcaacttttgttaactaatttttgctta 305  Q
    ||||| ||||||||||| |||||||| ||| |||  |||||||||||| |||| || |||  |||||||||||||| || | || ||| ||||||| |||    
T  35939 ccgtcttaaaatataaataaaaattgatcaacaaccgttaatgtatttggtacaaaatttgtatcaaatacatcaatttatattgactcatttttgttta 36038  T
Q  306 tatttt 311  Q
     |||||    
T  36039 catttt 36044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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