View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_19 (Length: 409)
Name: NF17649_low_19
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 32956428 - 32956160
Alignment:
| Q |
14 |
aatattggtagtaactctaacaatgattctcttcttgctcgtcgatgtgctagctgtgactccacttctacacccctttggaggaatggtcctcgtggcc |
113 |
Q |
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| T |
32956428 |
aatattggtagtaactctaacaatgattctcttcttgctcgtcgttgtgctagctgtgactccacttctacacccctttggaggaatggtcctcgtggcc |
32956329 |
T |
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| Q |
114 |
ctaaggtaaaaatacattaccaataccacctttgtgtctatgttcaaaatatatgagccaagacctcgtagtagactataaatgttcggcaaaaatcatt |
213 |
Q |
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| T |
32956328 |
ctaaggtaaaaatacattaccaataccatctttgtgtctatgttcaaaatatatgagccgagacctcgtagtagactataaatgttcggcaaaaatcatt |
32956229 |
T |
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| Q |
214 |
tatagcttactaggtctcagct-----gtaagagtttgactttgttagatatgagacaatgtcatgcta |
277 |
Q |
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| T |
32956228 |
tataacttactaggtctgagctcaggagtaagagtttgactttgttagataggagacaatgtcatgcta |
32956160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 32956094 - 32956046
Alignment:
| Q |
343 |
aataatggttgaattgaaattgcagtcactatgcaatgcttgtgggatt |
391 |
Q |
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| T |
32956094 |
aataatggttgaattgaaattgcagtcactatgcaatgcttgtgggatt |
32956046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 7723517 - 7723610
Alignment:
| Q |
32 |
aacaatgattctcttcttgctcgtcgatgtgctagctgtgactccacttctacacccctttggaggaatggtcctcgtggccctaaggtaaaaa |
125 |
Q |
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| T |
7723517 |
aacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaacggccctcgaggcccaaaggtaaaaa |
7723610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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