View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17649_low_21 (Length: 373)
Name: NF17649_low_21
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 112 - 359
Target Start/End: Complemental strand, 23340451 - 23340204
Alignment:
| Q |
112 |
tttaaggtaagatctatgagaaacttgttgcaaacacacgagttgtgcgagcgttattcatgttgaccagttatatagtacatagcatatacagaaaaat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23340451 |
tttaaggtaagatctatgagaaacttgttgcaaacacacgagttgtgtgagcgttattcatgttgaacagttatatagtacatagcatatacagaaaaat |
23340352 |
T |
|
| Q |
212 |
tcaccaagcatggttgaaatgttaaatcttacatctgacattgatatgattgaaatctttgaatttaccaaaaccaaagtttctccatatgacagtttgg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23340351 |
tcaccaagcatggttgaaatgttaaatcttacatctgatattgatatgattgaaatctttgaatttaccaaaaccaaagtttctccatatgacagtttgg |
23340252 |
T |
|
| Q |
312 |
tttaaccacatttatgtcgccattgataggacgatacatgatcctttg |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23340251 |
tttaaccacatttatgtcgccattgataggacgatacatgatcctttg |
23340204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 23386751 - 23386963
Alignment:
| Q |
16 |
atatatatgtaacactggtgtacaaagtatatgaagaatactttacactttatacttaca-tgaataacaacatagagaagatagctaattatattgttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| ||||||| ||| |
|
|
| T |
23386751 |
atatatatgtaacactggtgtacaaagtatatgaagaatactttacactttatacttacagtggataacaacatagagaagataactagttatatttttt |
23386850 |
T |
|
| Q |
115 |
aaggtaagatctatgagaaacttgttgcaaacacacgagttgtgcgagcgttattcatgttgaccagttatatagtacatagcatatacagaaaaattca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23386851 |
aaggtaagatctatgagaaacttgttgcaaacacacgagttgtgcgagcgttattcatgttgaccagttatatagtacatagcatatacagaaaaattca |
23386950 |
T |
|
| Q |
215 |
ccaagcatggttg |
227 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23386951 |
ccaagcatggttg |
23386963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 268 - 359
Target Start/End: Original strand, 23387665 - 23387756
Alignment:
| Q |
268 |
ctttgaatttaccaaaaccaaagtttctccatatgacagtttggtttaaccacatttatgtcgccattgataggacgatacatgatcctttg |
359 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23387665 |
ctttgaatctaccaaaaccaaagtttctccatatgacagtttggtttaaccacatttatgtcgccattgataggaagatacatgatcctttg |
23387756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 23340501 - 23340451
Alignment:
| Q |
16 |
atatatatgtaacactggtgtacaaagtatatgaagaatactttacacttt |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23340501 |
atatatatgtaacactggtgtacaaagtatatgaagaatactttacacttt |
23340451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University